Wall clock time and date at job start Mon Mar 30 2020 01:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47520 * 2 1 4 4 C 1.53001 * 109.47520 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.82250 * 59.10711 * 4 3 2 6 6 C 1.54380 * 109.83490 * 179.97438 * 4 3 2 7 7 C 1.55303 * 102.25289 * 140.86496 * 6 4 3 8 8 C 1.54941 * 100.94502 * 325.86964 * 7 6 4 9 9 H 1.09002 * 110.30812 * 277.52770 * 8 7 6 10 10 C 1.50702 * 110.30829 * 155.45712 * 8 7 6 11 11 H 1.07995 * 120.00230 * 1.39187 * 10 8 7 12 12 C 1.37882 * 119.99671 * 181.39203 * 10 8 7 13 13 N 1.31517 * 120.00023 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99762 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47322 * 59.99585 * 14 12 10 16 16 H 1.48504 * 109.46756 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47144 * 299.99428 * 14 12 10 18 18 O 1.43240 * 109.82747 * 298.13382 * 4 3 2 19 19 H 1.08999 * 109.47015 * 300.00990 * 1 2 3 20 20 H 1.08998 * 109.46235 * 60.00509 * 1 2 3 21 21 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47582 * 239.99490 * 2 1 3 23 23 H 1.09003 * 109.46922 * 119.99638 * 2 1 3 24 24 H 1.08999 * 109.47784 * 59.99481 * 3 2 1 25 25 H 1.09004 * 109.46587 * 299.99229 * 3 2 1 26 26 H 1.09002 * 109.47105 * 180.89019 * 5 4 3 27 27 H 1.08997 * 109.47342 * 300.88864 * 5 4 3 28 28 H 1.08994 * 109.47078 * 60.89057 * 5 4 3 29 29 H 1.09009 * 110.84476 * 22.67510 * 6 4 3 30 30 H 1.08995 * 110.84598 * 259.06180 * 6 4 3 31 31 H 1.08998 * 111.12625 * 207.94466 * 7 6 4 32 32 H 1.09008 * 111.15668 * 83.80585 * 7 6 4 33 33 H 0.96998 * 119.99537 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0895 0.7032 -1.2342 6 6 4.0939 2.8947 0.0000 7 6 5.3127 2.8058 0.9584 8 6 4.8139 1.7444 1.9710 9 1 4.1790 2.2098 2.7249 10 6 5.9837 1.0561 2.6260 11 1 6.9923 1.3500 2.3760 12 6 5.7660 0.0510 3.5445 13 7 4.5377 -0.3066 3.8493 14 14 7.2159 -0.8017 4.3569 15 1 8.0233 0.1969 5.1024 16 1 6.7175 -1.8367 5.2980 17 1 8.0594 -1.4431 3.3166 18 8 4.0555 0.8072 1.1892 19 1 -0.3633 0.5140 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6768 1.9564 0.8899 25 1 1.6769 1.9562 -0.8901 26 1 5.1793 0.6929 -1.2198 27 1 3.7164 -0.3209 -1.2283 28 1 3.7428 1.2110 -2.1341 29 1 3.3412 3.5787 0.3920 30 1 4.4078 3.1933 -1.0001 31 1 5.4968 3.7614 1.4495 32 1 6.2024 2.4595 0.4324 33 1 4.3846 -1.0134 4.4957 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306250814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:42 Heat of formation + Delta-G solvation = -90.460449 kcal Electronic energy + Delta-G solvation = -13403.378806 eV Core-core repulsion = 11234.388089 eV Total energy + Delta-G solvation = -2168.990717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.38159 -36.03934 -34.47005 -32.74409 -31.79737 -28.37303 -27.53447 -25.06765 -22.77540 -21.71477 -20.32273 -18.59190 -17.03418 -16.67330 -16.25960 -15.49821 -15.20500 -14.46348 -14.07952 -13.92553 -13.64298 -13.50427 -13.04023 -12.79058 -12.66833 -12.54104 -12.39546 -12.14852 -12.08679 -11.96895 -11.44628 -11.26225 -11.00125 -10.90259 -10.65452 -9.72273 -8.13289 -6.34106 1.38920 1.42183 1.49648 2.40728 3.06690 3.58843 3.92892 3.96087 4.21983 4.24804 4.35579 4.45460 4.59727 4.69347 4.76164 4.86057 4.89748 4.97757 5.00172 5.02649 5.15078 5.19703 5.21012 5.36242 5.43802 5.56067 5.63027 5.68690 5.78009 6.21689 6.65418 7.16445 7.42433 8.94333 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037138 B = 0.011468 C = 0.009736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.766358 B = 2440.955992 C = 2875.189339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.109 4.109 4 C 0.074 3.926 5 C -0.141 4.141 6 C -0.136 4.136 7 C -0.140 4.140 8 C 0.203 3.797 9 H -0.014 1.014 10 C -0.557 4.557 11 H 0.063 0.937 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.960 3.040 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.270 1.270 18 O -0.382 6.382 19 H 0.044 0.956 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.040 0.960 25 H 0.090 0.910 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.922 3.571 -9.228 10.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.147 4.147 4 C 0.035 3.965 5 C -0.198 4.198 6 C -0.174 4.174 7 C -0.178 4.178 8 C 0.147 3.853 9 H 0.004 0.996 10 C -0.595 4.595 11 H 0.081 0.919 12 C -0.180 4.180 13 N -0.539 5.539 14 Si 0.784 3.216 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.195 1.195 18 O -0.302 6.302 19 H 0.063 0.937 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.077 3.252 -9.067 10.460 hybrid contribution 0.687 -0.427 0.874 1.191 sum -3.390 2.826 -8.193 9.306 Atomic orbital electron populations 1.21730 0.94560 1.01808 1.01901 1.21424 0.96441 0.96841 1.00961 1.21842 0.94153 0.97242 1.01437 1.22335 0.93881 0.92406 0.87924 1.22019 1.00433 1.00593 0.96765 1.23133 0.97283 0.96178 1.00757 1.23176 0.98099 0.99179 0.97336 1.20331 0.89089 0.86935 0.88917 0.99645 1.21536 0.92854 1.21322 1.23766 0.91927 1.25958 0.98296 0.97169 0.96538 1.70185 1.21630 1.29347 1.32777 0.85613 0.79362 0.78346 0.78286 1.18836 1.20813 1.19534 1.88749 1.70917 1.37892 1.32642 0.93685 0.91005 0.92452 0.91478 0.95255 0.94078 0.89180 0.93936 0.93095 0.89494 0.90876 0.88540 0.90907 0.91887 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.12 -4.10 5.44 30.59 0.17 -3.93 16 3 C -0.11 -3.75 4.36 30.59 0.13 -3.61 16 4 C 0.07 2.93 0.93 -10.32 -0.01 2.92 16 5 C -0.14 -4.78 8.38 71.98 0.60 -4.18 16 6 C -0.14 -4.71 6.09 31.85 0.19 -4.52 16 7 C -0.14 -5.89 6.53 32.05 0.21 -5.68 16 8 C 0.20 11.03 3.24 30.51 0.10 11.12 16 9 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 10 C -0.56 -32.69 8.80 25.60 0.23 -32.46 16 11 H 0.06 3.52 7.76 -2.91 -0.02 3.50 16 12 C 0.02 1.31 5.42 84.66 0.46 1.77 16 13 N -0.90 -56.34 12.99 21.45 0.28 -56.07 16 14 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 O -0.38 -20.42 9.40 -148.98 -1.40 -21.82 16 19 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 20 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 2.12 6.42 -2.39 -0.02 2.11 16 23 H 0.03 1.27 7.75 -2.39 -0.02 1.25 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.77 6.40 -2.39 -0.02 1.76 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.37 7.85 -2.38 -0.02 2.35 16 30 H 0.10 2.68 7.82 -2.39 -0.02 2.66 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.06 2.63 8.04 -2.38 -0.02 2.61 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.58 265.99 4.75 -62.83 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.05 Total: 9.47 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 2.79 Total: -41.72 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.40 Total: -21.82 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -67.58 4.75 -62.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.628 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds