Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47193 * 2 1 4 4 C 1.52999 * 110.27490 * 304.36786 * 3 2 1 5 5 C 1.54941 * 110.31173 * 182.16663 * 3 2 1 6 6 C 1.55296 * 100.94311 * 204.64081 * 5 3 2 7 7 C 1.54385 * 102.25365 * 34.13738 * 6 5 3 8 8 C 1.53006 * 109.82702 * 219.13024 * 7 6 5 9 9 C 1.50697 * 109.83502 * 98.15404 * 7 6 5 10 10 H 1.08004 * 119.99466 * 0.41802 * 9 7 6 11 11 C 1.37870 * 120.00361 * 180.41027 * 9 7 6 12 12 N 1.31516 * 120.00035 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00418 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47013 * 60.00328 * 13 11 9 15 15 H 1.48501 * 109.47215 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46872 * 300.00461 * 13 11 9 17 17 O 1.43240 * 107.58388 * 338.63992 * 7 6 5 18 18 H 1.09002 * 109.47079 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.46826 * 299.99748 * 1 2 3 20 20 H 1.09003 * 109.46961 * 59.99640 * 1 2 3 21 21 H 1.08999 * 109.47076 * 240.00703 * 2 1 3 22 22 H 1.08994 * 109.47527 * 120.00214 * 2 1 3 23 23 H 1.08997 * 109.47633 * 59.29461 * 4 3 2 24 24 H 1.09001 * 109.47277 * 179.29681 * 4 3 2 25 25 H 1.09005 * 109.47102 * 299.29875 * 4 3 2 26 26 H 1.09006 * 111.12666 * 322.56542 * 5 3 2 27 27 H 1.09003 * 111.12156 * 86.71909 * 5 3 2 28 28 H 1.09001 * 110.85384 * 275.94436 * 6 5 3 29 29 H 1.09007 * 110.85086 * 152.32201 * 6 5 3 30 30 H 1.09004 * 109.46517 * 179.58333 * 8 7 6 31 31 H 1.08999 * 109.46934 * 299.57786 * 8 7 6 32 32 H 1.08997 * 109.47474 * 59.58882 * 8 7 6 33 33 H 0.96994 * 120.00718 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 1.4530 2.2125 -1.1847 5 6 3.5883 1.4656 -0.0549 6 6 3.8856 2.8476 0.5880 7 6 2.7561 2.9725 1.6331 8 6 2.2438 4.4136 1.6738 9 6 3.2703 2.5724 2.9920 10 1 4.2989 2.2655 3.1112 11 6 2.4278 2.5983 4.0830 12 7 1.1751 2.9717 3.9377 13 14 3.0653 2.1031 5.7675 14 1 4.1835 2.9993 6.1566 15 1 1.9701 2.2160 6.7641 16 1 3.5488 0.6998 5.7208 17 8 1.6989 2.0919 1.2350 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5137 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 0.3651 2.2086 -1.1174 24 1 1.8146 3.2406 -1.1650 25 1 1.7610 1.7367 -2.1158 26 1 4.0146 0.6564 0.5382 27 1 3.9455 1.4261 -1.0840 28 1 3.8175 3.6434 -0.1537 29 1 4.8628 2.8487 1.0711 30 1 1.4419 4.4935 2.4079 31 1 3.0590 5.0814 1.9522 32 1 1.8652 4.6926 0.6905 33 1 0.5822 2.9896 4.7051 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = -62.043508 kcal Electronic energy + Delta-G solvation = -13822.151487 eV Core-core repulsion = 11654.393021 eV Total energy + Delta-G solvation = -2167.758466 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81461 -34.18022 -32.01693 -30.91738 -29.23468 -27.44107 -25.04951 -24.20342 -21.50835 -19.63412 -18.54078 -16.64110 -14.88654 -14.50640 -14.33748 -13.41741 -13.22235 -12.87220 -12.58867 -12.12235 -11.89681 -11.42020 -11.16525 -11.11572 -10.91624 -10.78880 -10.64045 -10.44311 -10.22981 -10.12929 -9.95020 -9.52044 -9.26742 -8.97591 -8.40710 -7.75133 -5.87047 -4.02771 3.35232 3.40032 3.42377 4.48033 4.99253 5.46393 5.50738 5.55930 5.77391 5.85410 5.98454 6.12865 6.19002 6.22829 6.28765 6.41181 6.49586 6.59957 6.71215 6.78112 6.86788 6.90958 6.98230 7.02230 7.15495 7.22631 7.48909 7.85435 8.18217 8.47298 8.76049 9.17458 9.67827 11.14792 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.013669 C = 0.012393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.280089 B = 2047.972782 C = 2258.751315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.098 3.902 4 C -0.158 4.158 5 C -0.139 4.139 6 C -0.142 4.142 7 C 0.229 3.771 8 C -0.140 4.140 9 C -0.531 4.531 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.861 5.861 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 O -0.339 6.339 18 H 0.039 0.961 19 H 0.067 0.933 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.010 0.990 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.095 -2.494 -7.247 7.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C 0.057 3.943 4 C -0.215 4.215 5 C -0.177 4.177 6 C -0.180 4.180 7 C 0.192 3.808 8 C -0.198 4.198 9 C -0.568 4.568 10 H 0.074 0.926 11 C -0.123 4.123 12 N -0.497 5.497 13 Si 0.713 3.287 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 O -0.259 6.259 18 H 0.059 0.941 19 H 0.086 0.914 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.723 -2.479 -7.029 7.488 hybrid contribution 0.574 -0.243 0.808 1.021 sum 1.297 -2.722 -6.221 6.913 Atomic orbital electron populations 1.21732 0.96091 1.00092 1.02416 1.21521 0.96226 0.95871 1.00980 1.22052 0.92377 0.92064 0.87824 1.22249 1.01458 1.00445 0.97375 1.23142 0.96487 0.98777 0.99301 1.23191 1.01257 0.95165 0.98356 1.19586 0.82302 0.87484 0.91437 1.22018 1.01797 0.96782 0.99164 1.21201 0.96498 1.47277 0.91860 0.92623 1.24973 0.94715 0.94117 0.98533 1.69948 1.04361 1.45461 1.29957 0.86796 0.78437 0.79194 0.84276 1.20323 1.21296 1.20302 1.88769 1.43341 1.59240 1.34549 0.94146 0.91401 0.93300 0.92774 0.91606 0.92297 0.92853 0.93489 0.91234 0.92583 0.93262 0.91676 0.89299 0.94789 0.97058 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.37 37.16 0.35 -2.17 16 2 C -0.11 -1.98 5.28 -26.73 -0.14 -2.12 16 3 C 0.10 1.99 0.85 -89.59 -0.08 1.91 16 4 C -0.16 -2.81 8.40 37.16 0.31 -2.50 16 5 C -0.14 -2.70 6.05 -24.49 -0.15 -2.85 16 6 C -0.14 -3.04 5.69 -24.79 -0.14 -3.18 16 7 C 0.23 5.83 0.82 -91.04 -0.07 5.75 16 8 C -0.14 -3.49 8.52 37.16 0.32 -3.18 16 9 C -0.53 -14.80 8.23 -34.44 -0.28 -15.08 16 10 H 0.06 1.53 7.48 -52.48 -0.39 1.14 16 11 C 0.08 2.29 5.26 -17.82 -0.09 2.20 16 12 N -0.86 -25.01 10.93 55.43 0.61 -24.41 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 O -0.34 -8.69 9.18 -35.23 -0.32 -9.01 16 18 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 20 H 0.05 0.77 6.41 -51.93 -0.33 0.43 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.06 1.04 6.40 -51.93 -0.33 0.71 16 24 H 0.05 0.98 7.33 -51.93 -0.38 0.60 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 27 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 28 H 0.05 0.97 7.51 -51.93 -0.39 0.58 16 29 H 0.06 1.38 7.60 -51.92 -0.39 0.98 16 30 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.01 0.24 7.98 -51.93 -0.41 -0.17 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 259.23 15.07 3.91 3.91 Total: -1.00 -29.26 259.23 -6.26 -35.52 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.45 Total: -1.26 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 0.02 Total: -21.22 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.61 Total: -24.41 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.32 Total: -9.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.26 -6.26 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.526 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds