Wall clock time and date at job start Mon Mar 30 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47390 * 2 1 4 4 C 1.52999 * 110.35083 * 57.85208 * 3 2 1 5 5 C 1.54944 * 110.31034 * 179.97438 * 3 2 1 6 6 C 1.55304 * 100.97800 * 155.37873 * 5 3 2 7 7 C 1.54379 * 102.25791 * 325.84617 * 6 5 3 8 8 C 1.52995 * 109.83343 * 140.95928 * 7 6 5 9 9 C 1.50692 * 109.83103 * 261.84507 * 7 6 5 10 10 H 1.08005 * 120.00365 * 359.97438 * 9 7 6 11 11 C 1.37876 * 120.00049 * 179.97438 * 9 7 6 12 12 N 1.31522 * 120.00151 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 120.00020 * 359.97438 * 11 9 7 14 14 H 1.48499 * 109.47006 * 90.00158 * 13 11 9 15 15 H 1.48498 * 109.47150 * 210.00128 * 13 11 9 16 16 H 1.48497 * 109.47246 * 330.00066 * 13 11 9 17 17 O 1.43243 * 107.58423 * 21.35560 * 7 6 5 18 18 H 1.08994 * 109.47128 * 300.00730 * 1 2 3 19 19 H 1.09005 * 109.46634 * 59.99914 * 1 2 3 20 20 H 1.08994 * 109.47591 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47521 * 239.99624 * 2 1 3 22 22 H 1.09002 * 109.47106 * 119.99878 * 2 1 3 23 23 H 1.08997 * 109.46936 * 182.14531 * 4 3 2 24 24 H 1.08996 * 109.47384 * 302.14664 * 4 3 2 25 25 H 1.08996 * 109.47351 * 62.14919 * 4 3 2 26 26 H 1.09002 * 111.12633 * 37.44003 * 5 3 2 27 27 H 1.08995 * 111.12590 * 273.32005 * 5 3 2 28 28 H 1.09000 * 110.84509 * 84.03927 * 6 5 3 29 29 H 1.09001 * 110.84819 * 207.44721 * 6 5 3 30 30 H 1.08997 * 109.47242 * 59.99882 * 8 7 6 31 31 H 1.08996 * 109.47703 * 180.02562 * 8 7 6 32 32 H 1.09007 * 109.47234 * 300.00668 * 8 7 6 33 33 H 0.96994 * 120.00098 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4978 2.1986 1.2145 5 6 3.5894 1.4651 0.0006 6 6 3.8651 2.8552 -0.6346 7 6 2.7002 2.9939 -1.6382 8 6 2.1892 4.4359 -1.6444 9 6 3.1667 2.6111 -3.0190 10 1 4.1887 2.2993 -3.1767 11 6 2.2890 2.6588 -4.0812 12 7 2.6962 2.3252 -5.2864 13 14 0.5212 3.1973 -3.8084 14 1 0.4200 4.6689 -3.9799 15 1 -0.3597 2.5222 -4.7950 16 1 0.0980 2.8289 -2.4335 17 8 1.6567 2.1085 -1.2150 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.8385 3.2334 1.1801 24 1 0.4082 2.1742 1.2010 25 1 1.8605 1.7270 2.1278 26 1 3.9942 0.6636 -0.6172 27 1 3.9826 1.4122 1.0158 28 1 3.8233 3.6414 0.1192 29 1 4.8266 2.8633 -1.1480 30 1 2.9975 5.1066 -1.9360 31 1 1.3671 4.5271 -2.3541 32 1 1.8389 4.7016 -0.6469 33 1 2.0786 2.3584 -6.0336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:01 Heat of formation + Delta-G solvation = -53.241926 kcal Electronic energy + Delta-G solvation = -13928.075203 eV Core-core repulsion = 11760.698402 eV Total energy + Delta-G solvation = -2167.376801 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14806 -34.38328 -32.13075 -31.23036 -29.89215 -27.79635 -24.97877 -24.48788 -21.78491 -19.72510 -18.84518 -16.81899 -15.26913 -14.85343 -14.16735 -13.74474 -13.46314 -13.10116 -12.65914 -12.44597 -12.17069 -11.99498 -11.54953 -11.43295 -11.17381 -10.99390 -10.80908 -10.50590 -10.18562 -9.96624 -9.85486 -9.74752 -9.45177 -8.84330 -8.47534 -8.09297 -6.03353 -4.09922 3.40962 3.50896 3.74395 4.58760 4.76157 5.30349 5.38244 5.40887 5.58035 5.69172 5.81187 5.95752 5.99971 6.03430 6.06277 6.26232 6.29020 6.33996 6.47448 6.52260 6.59031 6.65031 6.71850 6.73878 6.81841 6.94388 7.01215 7.33073 7.78779 8.42044 8.57082 8.97941 9.63138 11.07788 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034863 B = 0.016580 C = 0.014628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.951489 B = 1688.412277 C = 1913.689682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.098 3.902 4 C -0.159 4.159 5 C -0.138 4.138 6 C -0.129 4.129 7 C 0.192 3.808 8 C -0.148 4.148 9 C -0.518 4.518 10 H 0.074 0.926 11 C 0.083 3.917 12 N -0.897 5.897 13 Si 0.880 3.120 14 H -0.290 1.290 15 H -0.304 1.304 16 H -0.223 1.223 17 O -0.361 6.361 18 H 0.049 0.951 19 H 0.062 0.938 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 -1.041 11.582 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.058 3.942 4 C -0.216 4.216 5 C -0.176 4.176 6 C -0.167 4.167 7 C 0.155 3.845 8 C -0.205 4.205 9 C -0.555 4.555 10 H 0.092 0.908 11 C -0.120 4.120 12 N -0.535 5.535 13 Si 0.711 3.289 14 H -0.218 1.218 15 H -0.233 1.233 16 H -0.146 1.146 17 O -0.282 6.282 18 H 0.068 0.932 19 H 0.081 0.919 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.417 -1.090 11.307 11.613 hybrid contribution -0.671 0.366 -0.018 0.764 sum -3.088 -0.723 11.288 11.725 Atomic orbital electron populations 1.21743 0.96152 1.00395 1.02203 1.21546 0.96149 0.95592 1.01529 1.22118 0.92789 0.92042 0.87277 1.22245 1.01426 1.00573 0.97387 1.23140 0.95891 0.98792 0.99743 1.22983 1.00643 0.95372 0.97715 1.20020 0.83733 0.86692 0.94100 1.22338 1.00687 0.98598 0.98909 1.21112 0.98572 1.46688 0.89163 0.90751 1.25007 0.98884 0.93424 0.94693 1.69932 1.36041 1.47736 0.99792 0.87019 0.84873 0.76987 0.80030 1.21815 1.23266 1.14628 1.88826 1.42889 1.58668 1.37828 0.93178 0.91854 0.93770 0.91253 0.92300 0.92713 0.92355 0.93018 0.90755 0.92169 0.92966 0.90925 0.92297 0.93651 0.94909 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.42 37.16 0.35 -2.00 16 2 C -0.11 -1.87 5.27 -26.73 -0.14 -2.01 16 3 C 0.10 1.83 0.85 -89.59 -0.08 1.75 16 4 C -0.16 -2.54 8.49 37.16 0.32 -2.23 16 5 C -0.14 -2.50 6.05 -24.48 -0.15 -2.64 16 6 C -0.13 -2.59 5.69 -24.79 -0.14 -2.73 16 7 C 0.19 4.56 0.78 -91.06 -0.07 4.49 16 8 C -0.15 -3.31 8.23 37.16 0.31 -3.00 16 9 C -0.52 -14.73 8.84 -34.44 -0.30 -15.04 16 10 H 0.07 2.27 7.73 -52.48 -0.41 1.87 16 11 C 0.08 2.46 5.45 -17.82 -0.10 2.36 16 12 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 13 Si 0.88 22.94 23.91 -169.99 -4.07 18.87 16 14 H -0.29 -7.40 6.87 56.52 0.39 -7.01 16 15 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 16 H -0.22 -5.63 5.38 56.52 0.30 -5.33 16 17 O -0.36 -8.46 6.67 -35.23 -0.24 -8.69 16 18 H 0.05 0.72 6.41 -51.93 -0.33 0.39 16 19 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.89 7.32 -51.93 -0.38 0.51 16 24 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 27 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 28 H 0.05 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.07 1.48 7.62 -51.93 -0.40 1.08 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 1.08 3.19 -51.93 -0.17 0.91 16 32 H 0.03 0.64 7.93 -51.93 -0.41 0.23 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 250.00 15.07 3.77 3.77 Total: -1.00 -30.80 250.00 -5.18 -35.98 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.42 Total: -1.66 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.01 Total: -21.04 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.22 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.24 Total: -8.69 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.07 Total: 18.87 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.80 -5.18 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.265 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds