Wall clock time and date at job start Mon Mar 30 2020 01:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47390 * 2 1 4 4 C 1.52999 * 110.35083 * 57.85208 * 3 2 1 5 5 C 1.54944 * 110.31034 * 179.97438 * 3 2 1 6 6 C 1.55304 * 100.97800 * 155.37873 * 5 3 2 7 7 C 1.54379 * 102.25791 * 325.84617 * 6 5 3 8 8 C 1.52995 * 109.83343 * 140.95928 * 7 6 5 9 9 C 1.50692 * 109.83103 * 261.84507 * 7 6 5 10 10 H 1.08005 * 120.00365 * 359.97438 * 9 7 6 11 11 C 1.37876 * 120.00049 * 179.97438 * 9 7 6 12 12 N 1.31522 * 120.00151 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 120.00020 * 359.97438 * 11 9 7 14 14 H 1.48499 * 109.47006 * 90.00158 * 13 11 9 15 15 H 1.48498 * 109.47150 * 210.00128 * 13 11 9 16 16 H 1.48497 * 109.47246 * 330.00066 * 13 11 9 17 17 O 1.43243 * 107.58423 * 21.35560 * 7 6 5 18 18 H 1.08994 * 109.47128 * 300.00730 * 1 2 3 19 19 H 1.09005 * 109.46634 * 59.99914 * 1 2 3 20 20 H 1.08994 * 109.47591 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47521 * 239.99624 * 2 1 3 22 22 H 1.09002 * 109.47106 * 119.99878 * 2 1 3 23 23 H 1.08997 * 109.46936 * 182.14531 * 4 3 2 24 24 H 1.08996 * 109.47384 * 302.14664 * 4 3 2 25 25 H 1.08996 * 109.47351 * 62.14919 * 4 3 2 26 26 H 1.09002 * 111.12633 * 37.44003 * 5 3 2 27 27 H 1.08995 * 111.12590 * 273.32005 * 5 3 2 28 28 H 1.09000 * 110.84509 * 84.03927 * 6 5 3 29 29 H 1.09001 * 110.84819 * 207.44721 * 6 5 3 30 30 H 1.08997 * 109.47242 * 59.99882 * 8 7 6 31 31 H 1.08996 * 109.47703 * 180.02562 * 8 7 6 32 32 H 1.09007 * 109.47234 * 300.00668 * 8 7 6 33 33 H 0.96994 * 120.00098 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4978 2.1986 1.2145 5 6 3.5894 1.4651 0.0006 6 6 3.8651 2.8552 -0.6346 7 6 2.7002 2.9939 -1.6382 8 6 2.1892 4.4359 -1.6444 9 6 3.1667 2.6111 -3.0190 10 1 4.1887 2.2993 -3.1767 11 6 2.2890 2.6588 -4.0812 12 7 2.6962 2.3252 -5.2864 13 14 0.5212 3.1973 -3.8084 14 1 0.4200 4.6689 -3.9799 15 1 -0.3597 2.5222 -4.7950 16 1 0.0980 2.8289 -2.4335 17 8 1.6567 2.1085 -1.2150 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.8385 3.2334 1.1801 24 1 0.4082 2.1742 1.2010 25 1 1.8605 1.7270 2.1278 26 1 3.9942 0.6636 -0.6172 27 1 3.9826 1.4122 1.0158 28 1 3.8233 3.6414 0.1192 29 1 4.8266 2.8633 -1.1480 30 1 2.9975 5.1066 -1.9360 31 1 1.3671 4.5271 -2.3541 32 1 1.8389 4.7016 -0.6469 33 1 2.0786 2.3584 -6.0336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306343377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:00 Heat of formation + Delta-G solvation = -73.372546 kcal Electronic energy + Delta-G solvation = -13928.948132 eV Core-core repulsion = 11760.698402 eV Total energy + Delta-G solvation = -2168.249730 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75564 -36.01990 -34.16848 -32.89973 -31.50309 -29.14977 -27.08080 -25.92175 -23.27402 -21.45095 -20.44093 -18.82688 -17.10948 -16.46004 -15.85614 -15.33939 -14.94623 -14.70908 -14.60308 -14.19077 -13.67870 -13.62369 -12.94535 -12.83836 -12.76199 -12.58831 -12.46658 -12.14123 -11.86580 -11.75022 -11.65207 -11.24986 -11.01870 -10.71651 -10.66218 -9.88280 -8.31542 -6.40347 1.31763 1.40160 1.67206 2.42076 2.97425 3.40680 3.89623 4.00560 4.17461 4.27588 4.46486 4.50455 4.53795 4.70379 4.74861 4.81955 4.87657 4.91615 4.99475 5.05769 5.08910 5.20220 5.26044 5.30643 5.39341 5.46456 5.61001 5.68076 5.74604 6.24834 6.61853 6.89478 7.37513 8.83560 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034863 B = 0.016580 C = 0.014628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.951489 B = 1688.412277 C = 1913.689682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.083 3.917 4 C -0.152 4.152 5 C -0.133 4.133 6 C -0.128 4.128 7 C 0.187 3.813 8 C -0.148 4.148 9 C -0.519 4.519 10 H 0.034 0.966 11 C 0.027 3.973 12 N -0.947 5.947 13 Si 0.940 3.060 14 H -0.280 1.280 15 H -0.314 1.314 16 H -0.209 1.209 17 O -0.387 6.387 18 H 0.070 0.930 19 H 0.030 0.970 20 H 0.062 0.938 21 H 0.041 0.959 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -0.693 14.828 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.044 3.956 4 C -0.210 4.210 5 C -0.170 4.170 6 C -0.166 4.166 7 C 0.148 3.852 8 C -0.205 4.205 9 C -0.557 4.557 10 H 0.052 0.948 11 C -0.171 4.171 12 N -0.588 5.588 13 Si 0.769 3.231 14 H -0.208 1.208 15 H -0.243 1.243 16 H -0.132 1.132 17 O -0.308 6.308 18 H 0.089 0.911 19 H 0.049 0.951 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.112 0.888 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.412 -0.739 14.580 14.992 hybrid contribution -0.256 0.185 -0.987 1.036 sum -3.668 -0.553 13.593 14.090 Atomic orbital electron populations 1.21716 0.95381 1.01531 1.01535 1.21590 0.96866 0.94612 1.01860 1.22541 0.93240 0.93048 0.86760 1.22180 1.01552 1.00308 0.96917 1.23144 0.95758 0.96769 1.01372 1.22943 0.98346 0.97728 0.97549 1.19944 0.85484 0.87455 0.92283 1.22292 1.00266 0.97535 1.00408 1.21500 0.96803 1.45128 0.92250 0.94792 1.25810 1.02942 0.93917 0.94414 1.70071 1.37477 1.50395 1.00839 0.86082 0.80022 0.76857 0.80135 1.20775 1.24286 1.13184 1.88714 1.42549 1.59091 1.40461 0.91140 0.95093 0.91864 0.94057 0.88842 0.92779 0.92126 0.89778 0.92864 0.88170 0.89845 0.92443 0.91913 0.95292 0.91561 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.42 71.98 0.68 -3.52 16 2 C -0.11 -3.48 5.27 30.60 0.16 -3.32 16 3 C 0.08 2.86 0.85 -10.13 -0.01 2.85 16 4 C -0.15 -4.11 8.49 71.98 0.61 -3.50 16 5 C -0.13 -4.45 6.05 32.05 0.19 -4.26 16 6 C -0.13 -4.86 5.69 31.85 0.18 -4.68 16 7 C 0.19 8.65 0.78 -11.08 -0.01 8.64 16 8 C -0.15 -6.27 8.23 71.98 0.59 -5.68 16 9 C -0.52 -30.33 8.84 25.60 0.23 -30.10 16 10 H 0.03 2.18 7.73 -2.91 -0.02 2.16 16 11 C 0.03 1.65 5.45 84.65 0.46 2.11 16 12 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 13 Si 0.94 48.22 23.91 68.60 1.64 49.86 16 14 H -0.28 -13.76 6.87 99.48 0.68 -13.08 16 15 H -0.31 -16.34 7.11 99.48 0.71 -15.64 16 16 H -0.21 -10.17 5.38 99.48 0.54 -9.64 16 17 O -0.39 -17.47 6.67 -148.98 -0.99 -18.47 16 18 H 0.07 1.75 6.41 -2.39 -0.02 1.73 16 19 H 0.03 1.08 7.85 -2.38 -0.02 1.06 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.05 1.47 7.32 -2.39 -0.02 1.45 16 24 H 0.06 1.61 6.36 -2.39 -0.02 1.60 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 27 H 0.10 2.55 8.03 -2.39 -0.02 2.53 16 28 H 0.08 2.64 7.53 -2.39 -0.02 2.62 16 29 H 0.06 2.32 7.62 -2.39 -0.02 2.30 16 30 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.03 1.31 3.19 -2.39 -0.01 1.30 16 32 H 0.07 2.34 7.93 -2.38 -0.02 2.32 16 33 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -68.58 250.00 4.90 -63.68 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.87 Total: 7.55 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 3.09 Total: -41.44 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.30 Total: -61.19 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.99 Total: -18.47 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.64 Total: 49.86 kcal Total: -68.58 4.90 -63.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.690 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds