Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 C 1.53006 * 110.27276 * 59.30138 * 3 2 1 5 5 C 1.54945 * 110.31346 * 181.39305 * 3 2 1 6 6 C 1.55562 * 100.82775 * 155.40987 * 5 3 2 7 7 C 1.54382 * 102.27315 * 325.88206 * 6 5 3 8 8 C 1.53001 * 109.83331 * 261.84300 * 7 6 5 9 9 C 1.50700 * 109.83049 * 140.86983 * 7 6 5 10 10 H 1.08010 * 120.00211 * 0.41135 * 9 7 6 11 11 C 1.37879 * 120.00414 * 180.41295 * 9 7 6 12 12 N 1.31518 * 119.99694 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00199 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47360 * 89.99729 * 13 11 9 15 15 H 1.48506 * 109.47056 * 210.00105 * 13 11 9 16 16 H 1.48504 * 109.47309 * 329.99581 * 13 11 9 17 17 O 1.43235 * 107.59271 * 21.35824 * 7 6 5 18 18 H 1.08998 * 109.46901 * 299.99019 * 1 2 3 19 19 H 1.09000 * 109.47671 * 59.99618 * 1 2 3 20 20 H 1.09005 * 109.46537 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.46896 * 240.00976 * 2 1 3 22 22 H 1.09000 * 109.47671 * 120.00382 * 2 1 3 23 23 H 1.09001 * 109.47002 * 60.69933 * 4 3 2 24 24 H 1.08993 * 109.46955 * 180.70371 * 4 3 2 25 25 H 1.09000 * 109.47050 * 300.70199 * 4 3 2 26 26 H 1.09005 * 111.12427 * 273.38190 * 5 3 2 27 27 H 1.09000 * 111.12322 * 37.54406 * 5 3 2 28 28 H 1.09001 * 110.83847 * 207.68568 * 6 5 3 29 29 H 1.08995 * 110.83592 * 84.08038 * 6 5 3 30 30 H 1.09001 * 109.46912 * 179.59195 * 8 7 6 31 31 H 1.09002 * 109.46811 * 299.58655 * 8 7 6 32 32 H 1.08996 * 109.47115 * 59.58575 * 8 7 6 33 33 H 0.96999 * 119.99857 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5259 2.1866 1.2341 5 6 3.5889 1.4654 -0.0353 6 6 3.8461 2.8641 -0.6659 7 6 2.6564 3.0093 -1.6389 8 6 3.0957 2.6344 -3.0557 9 6 2.1489 4.4281 -1.6178 10 1 2.6240 5.1623 -0.9839 11 6 1.0781 4.7892 -2.4078 12 7 0.4999 3.8954 -3.1801 13 14 0.4497 6.5481 -2.3822 14 1 1.1611 7.3431 -3.4151 15 1 -1.0077 6.5572 -2.6673 16 1 0.6958 7.1423 -1.0437 17 8 1.6253 2.1180 -1.1981 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.8892 1.6912 2.1346 24 1 1.8862 3.2150 1.2146 25 1 0.4359 2.1834 1.2324 26 1 4.0057 1.4030 0.9699 27 1 3.9791 0.6702 -0.6705 28 1 4.7928 2.8777 -1.2060 29 1 3.8216 3.6432 0.0959 30 1 2.2498 2.7319 -3.7361 31 1 3.8977 3.2997 -3.3754 32 1 3.4526 1.6045 -3.0649 33 1 -0.2537 4.1493 -3.7356 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = -62.252970 kcal Electronic energy + Delta-G solvation = -13830.387262 eV Core-core repulsion = 11662.619713 eV Total energy + Delta-G solvation = -2167.767549 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80727 -34.16895 -32.01431 -30.94625 -29.29985 -27.05520 -25.29183 -24.18234 -21.62701 -19.54418 -18.57755 -16.35914 -14.91007 -14.77667 -14.39365 -13.45014 -13.27996 -12.78130 -12.30255 -12.06981 -11.78240 -11.51045 -11.20666 -11.15697 -10.91045 -10.82300 -10.54240 -10.44872 -10.33869 -10.09224 -9.92940 -9.55198 -9.26841 -8.96538 -8.40176 -7.73914 -5.87079 -4.02701 3.33460 3.40698 3.43505 4.47972 4.98967 5.43613 5.50248 5.53396 5.77851 5.85468 6.00365 6.09635 6.24187 6.30329 6.38254 6.40734 6.50000 6.61471 6.68312 6.76083 6.83734 6.93433 6.96687 7.02310 7.18186 7.24215 7.53967 7.86512 8.18292 8.46336 8.76535 9.17173 9.68025 11.14687 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.013615 C = 0.012541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.718586 B = 2056.016876 C = 2232.106485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C 0.100 3.900 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.140 4.140 7 C 0.229 3.771 8 C -0.138 4.138 9 C -0.531 4.531 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.860 5.860 13 Si 0.884 3.116 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 O -0.340 6.340 18 H 0.050 0.950 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.010 0.990 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -4.921 5.265 7.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C 0.059 3.941 4 C -0.210 4.210 5 C -0.186 4.186 6 C -0.178 4.178 7 C 0.191 3.809 8 C -0.196 4.196 9 C -0.569 4.569 10 H 0.074 0.926 11 C -0.123 4.123 12 N -0.497 5.497 13 Si 0.712 3.288 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 O -0.259 6.259 18 H 0.069 0.931 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.415 -4.975 5.019 7.468 hybrid contribution -0.141 1.036 0.141 1.055 sum 2.275 -3.939 5.160 6.878 Atomic orbital electron populations 1.21707 0.95830 0.99930 1.02834 1.21559 0.96557 0.95907 1.00672 1.22035 0.91626 0.91512 0.88913 1.22146 1.01518 1.01059 0.96318 1.23292 0.96915 0.98468 0.99942 1.23246 0.99973 0.95071 0.99489 1.19586 0.82804 0.88990 0.89493 1.21967 1.01106 0.95812 1.00676 1.21275 1.16296 0.93776 1.25526 0.92624 1.24974 0.96113 0.96534 0.94711 1.69962 1.21714 1.32784 1.25250 0.86747 0.78113 0.85614 0.78318 1.20743 1.21227 1.19978 1.88747 1.41922 1.57380 1.37898 0.93115 0.91274 0.94236 0.92220 0.92666 0.93990 0.91998 0.92432 0.92165 0.91883 0.92541 0.91922 0.89295 0.94769 0.97077 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.44 37.16 0.35 -2.17 16 2 C -0.11 -1.92 5.26 -26.73 -0.14 -2.06 16 3 C 0.10 2.03 0.85 -89.59 -0.08 1.96 16 4 C -0.15 -2.93 8.49 37.16 0.32 -2.62 16 5 C -0.15 -2.78 6.07 -24.34 -0.15 -2.93 16 6 C -0.14 -2.99 5.69 -24.64 -0.14 -3.13 16 7 C 0.23 5.79 0.82 -91.05 -0.07 5.72 16 8 C -0.14 -3.44 8.51 37.16 0.32 -3.12 16 9 C -0.53 -14.74 8.22 -34.44 -0.28 -15.03 16 10 H 0.06 1.53 7.52 -52.48 -0.39 1.13 16 11 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 12 N -0.86 -24.96 10.93 55.43 0.61 -24.35 16 13 Si 0.88 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 O -0.34 -8.67 9.03 -35.23 -0.32 -8.99 16 18 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 19 H 0.07 1.40 7.80 -51.93 -0.40 0.99 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.28 7.48 -51.93 -0.39 0.90 16 25 H 0.06 1.11 6.46 -51.93 -0.34 0.78 16 26 H 0.06 0.98 8.03 -51.93 -0.42 0.57 16 27 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 29 H 0.06 1.33 7.31 -51.93 -0.38 0.95 16 30 H 0.09 2.45 6.05 -51.93 -0.31 2.14 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -29.16 259.60 -6.26 -35.42 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.47 Total: -1.25 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 0.03 Total: -21.19 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.61 Total: -24.35 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.32 Total: -8.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.16 -6.26 -35.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.831 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds