Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 C 1.53006 * 110.27276 * 59.30138 * 3 2 1 5 5 C 1.54945 * 110.31346 * 181.39305 * 3 2 1 6 6 C 1.55562 * 100.82775 * 155.40987 * 5 3 2 7 7 C 1.54382 * 102.27315 * 325.88206 * 6 5 3 8 8 C 1.53001 * 109.83331 * 261.84300 * 7 6 5 9 9 C 1.50700 * 109.83049 * 140.86983 * 7 6 5 10 10 H 1.08010 * 120.00211 * 0.41135 * 9 7 6 11 11 C 1.37879 * 120.00414 * 180.41295 * 9 7 6 12 12 N 1.31518 * 119.99694 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00199 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47360 * 89.99729 * 13 11 9 15 15 H 1.48506 * 109.47056 * 210.00105 * 13 11 9 16 16 H 1.48504 * 109.47309 * 329.99581 * 13 11 9 17 17 O 1.43235 * 107.59271 * 21.35824 * 7 6 5 18 18 H 1.08998 * 109.46901 * 299.99019 * 1 2 3 19 19 H 1.09000 * 109.47671 * 59.99618 * 1 2 3 20 20 H 1.09005 * 109.46537 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.46896 * 240.00976 * 2 1 3 22 22 H 1.09000 * 109.47671 * 120.00382 * 2 1 3 23 23 H 1.09001 * 109.47002 * 60.69933 * 4 3 2 24 24 H 1.08993 * 109.46955 * 180.70371 * 4 3 2 25 25 H 1.09000 * 109.47050 * 300.70199 * 4 3 2 26 26 H 1.09005 * 111.12427 * 273.38190 * 5 3 2 27 27 H 1.09000 * 111.12322 * 37.54406 * 5 3 2 28 28 H 1.09001 * 110.83847 * 207.68568 * 6 5 3 29 29 H 1.08995 * 110.83592 * 84.08038 * 6 5 3 30 30 H 1.09001 * 109.46912 * 179.59195 * 8 7 6 31 31 H 1.09002 * 109.46811 * 299.58655 * 8 7 6 32 32 H 1.08996 * 109.47115 * 59.58575 * 8 7 6 33 33 H 0.96999 * 119.99857 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5259 2.1866 1.2341 5 6 3.5889 1.4654 -0.0353 6 6 3.8461 2.8641 -0.6659 7 6 2.6564 3.0093 -1.6389 8 6 3.0957 2.6344 -3.0557 9 6 2.1489 4.4281 -1.6178 10 1 2.6240 5.1623 -0.9839 11 6 1.0781 4.7892 -2.4078 12 7 0.4999 3.8954 -3.1801 13 14 0.4497 6.5481 -2.3822 14 1 1.1611 7.3431 -3.4151 15 1 -1.0077 6.5572 -2.6673 16 1 0.6958 7.1423 -1.0437 17 8 1.6253 2.1180 -1.1981 18 1 -0.3633 0.5137 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3632 -1.0277 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.8892 1.6912 2.1346 24 1 1.8862 3.2150 1.2146 25 1 0.4359 2.1834 1.2324 26 1 4.0057 1.4030 0.9699 27 1 3.9791 0.6702 -0.6705 28 1 4.7928 2.8777 -1.2060 29 1 3.8216 3.6432 0.0959 30 1 2.2498 2.7319 -3.7361 31 1 3.8977 3.2997 -3.3754 32 1 3.4526 1.6045 -3.0649 33 1 -0.2537 4.1493 -3.7356 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306343379.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = -79.235536 kcal Electronic energy + Delta-G solvation = -13831.123682 eV Core-core repulsion = 11662.619713 eV Total energy + Delta-G solvation = -2168.503968 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.49900 -35.90762 -33.92393 -32.69012 -30.98435 -28.68320 -27.32858 -25.82902 -23.19486 -21.33367 -20.22437 -18.36913 -16.74013 -16.43881 -16.12431 -15.24943 -14.85743 -14.34748 -14.00030 -13.80856 -13.52872 -13.11880 -12.99601 -12.79427 -12.70281 -12.58522 -12.30339 -12.14437 -12.07053 -11.86217 -11.61974 -11.12704 -10.93177 -10.81173 -10.50602 -9.61419 -7.97511 -6.19741 1.39861 1.41313 1.50314 2.44983 3.15408 3.59389 3.98718 4.02608 4.28977 4.38699 4.53463 4.57981 4.73925 4.85034 4.87065 4.90631 5.00472 5.02781 5.08575 5.12157 5.21291 5.23312 5.35466 5.41278 5.50617 5.62674 5.72021 5.79922 6.17240 6.40616 6.75293 7.27949 7.56624 9.02604 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.013615 C = 0.012541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.718586 B = 2056.016876 C = 2232.106485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C 0.082 3.918 4 C -0.148 4.148 5 C -0.136 4.136 6 C -0.137 4.137 7 C 0.215 3.785 8 C -0.131 4.131 9 C -0.548 4.548 10 H 0.049 0.951 11 C 0.033 3.967 12 N -0.889 5.889 13 Si 0.943 3.057 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.271 1.271 17 O -0.374 6.374 18 H 0.055 0.945 19 H 0.027 0.973 20 H 0.066 0.934 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -5.680 6.760 9.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C 0.042 3.958 4 C -0.205 4.205 5 C -0.174 4.174 6 C -0.175 4.175 7 C 0.177 3.823 8 C -0.189 4.189 9 C -0.585 4.585 10 H 0.067 0.933 11 C -0.168 4.168 12 N -0.527 5.527 13 Si 0.769 3.231 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.196 1.196 17 O -0.294 6.294 18 H 0.074 0.926 19 H 0.047 0.953 20 H 0.085 0.915 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.219 -5.733 6.522 9.261 hybrid contribution -0.381 1.239 -0.296 1.330 sum 2.838 -4.494 6.226 8.186 Atomic orbital electron populations 1.21655 0.96015 1.01178 1.01061 1.21570 0.96398 0.94202 1.02133 1.22456 0.93114 0.92738 0.87496 1.22093 1.00862 1.00003 0.97548 1.23263 0.95610 0.96801 1.01700 1.23140 0.98801 0.96825 0.98751 1.19644 0.84248 0.87956 0.90454 1.21856 0.99905 0.96869 1.00280 1.21650 1.16357 0.95413 1.25128 0.93272 1.25677 0.96511 1.00072 0.94582 1.70112 1.22080 1.34440 1.26026 0.85817 0.77408 0.81420 0.78447 1.19951 1.21222 1.19589 1.88681 1.42758 1.57807 1.40180 0.92553 0.95343 0.91469 0.92780 0.89011 0.90234 0.94364 0.93478 0.88971 0.90904 0.91349 0.92452 0.92480 0.94359 0.95490 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.44 71.98 0.68 -4.00 16 2 C -0.11 -3.43 5.26 30.59 0.16 -3.27 16 3 C 0.08 3.18 0.85 -10.13 -0.01 3.17 16 4 C -0.15 -5.38 8.49 71.98 0.61 -4.77 16 5 C -0.14 -4.68 6.07 32.14 0.20 -4.48 16 6 C -0.14 -5.65 5.69 31.95 0.18 -5.46 16 7 C 0.21 10.87 0.82 -11.07 -0.01 10.86 16 8 C -0.13 -6.59 8.51 71.98 0.61 -5.97 16 9 C -0.55 -30.76 8.22 25.60 0.21 -30.55 16 10 H 0.05 2.73 7.52 -2.91 -0.02 2.71 16 11 C 0.03 1.90 5.26 84.65 0.45 2.34 16 12 N -0.89 -52.89 10.93 21.45 0.23 -52.65 16 13 Si 0.94 44.66 29.54 68.60 2.03 46.69 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 O -0.37 -19.14 9.03 -148.98 -1.35 -20.49 16 18 H 0.06 1.76 6.47 -2.39 -0.02 1.75 16 19 H 0.03 1.14 7.80 -2.39 -0.02 1.12 16 20 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 21 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 25 H 0.05 1.77 6.46 -2.39 -0.02 1.76 16 26 H 0.09 2.58 8.03 -2.38 -0.02 2.56 16 27 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 28 H 0.07 2.59 7.82 -2.39 -0.02 2.57 16 29 H 0.06 2.38 7.31 -2.39 -0.02 2.36 16 30 H 0.06 3.22 6.05 -2.39 -0.01 3.21 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.28 259.60 5.05 -58.23 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.06 Total: 10.35 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.08 Total: -42.13 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.23 Total: -52.65 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.35 Total: -20.49 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.28 5.05 -58.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343379.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.007 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds