Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52996 * 110.27337 * 305.69480 * 3 2 1 5 5 C 1.54953 * 110.30676 * 183.60701 * 3 2 1 6 6 C 1.55307 * 100.93854 * 204.64156 * 5 3 2 7 7 C 1.54381 * 102.25601 * 34.13195 * 6 5 3 8 8 C 1.53000 * 109.82636 * 98.15434 * 7 6 5 9 9 C 1.50697 * 109.83233 * 219.03834 * 7 6 5 10 10 H 1.08005 * 119.99859 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00164 * 180.02562 * 9 7 6 12 12 N 1.31510 * 119.99785 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 120.00096 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46974 * 90.00015 * 13 11 9 15 15 H 1.48494 * 109.47515 * 209.99708 * 13 11 9 16 16 H 1.48498 * 109.47178 * 330.00089 * 13 11 9 17 17 O 1.43376 * 107.61156 * 338.56093 * 7 6 5 18 18 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 19 19 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 20 20 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 21 21 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 22 22 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 23 23 H 1.09006 * 109.47023 * 59.30843 * 4 3 2 24 24 H 1.09001 * 109.46660 * 179.29730 * 4 3 2 25 25 H 1.08992 * 109.47443 * 299.30043 * 4 3 2 26 26 H 1.09002 * 111.12020 * 322.55725 * 5 3 2 27 27 H 1.08996 * 111.12229 * 86.67738 * 5 3 2 28 28 H 1.09002 * 110.84403 * 152.32774 * 6 5 3 29 29 H 1.08999 * 110.84381 * 275.94098 * 6 5 3 30 30 H 1.09003 * 109.47048 * 60.00662 * 8 7 6 31 31 H 1.09002 * 109.47097 * 179.97438 * 8 7 6 32 32 H 1.08992 * 109.47773 * 300.00039 * 8 7 6 33 33 H 0.97003 * 120.00029 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4270 2.2215 -1.1656 5 6 3.5865 1.4663 -0.0914 6 6 3.8990 2.8430 0.5560 7 6 2.7945 2.9590 1.6284 8 6 3.3491 2.5414 2.9918 9 6 2.2926 4.3784 1.6938 10 1 2.7114 5.1300 1.0409 11 6 1.2987 4.7177 2.5872 12 7 0.7884 3.8025 3.3818 13 14 0.6770 6.4773 2.6688 14 1 -0.4572 6.6458 1.7250 15 1 0.2206 6.7776 4.0496 16 1 1.7731 7.4074 2.2965 17 8 1.7259 2.0824 1.2472 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.8934 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.3408 2.2170 -1.0743 24 1 1.7890 3.2495 -1.1458 25 1 1.7146 1.7531 -2.1067 26 1 4.0265 0.6523 0.4847 27 1 3.9192 1.4347 -1.1289 28 1 4.8873 2.8401 1.0156 29 1 3.8134 3.6448 -0.1774 30 1 4.1815 3.1920 3.2602 31 1 2.5651 2.6259 3.7443 32 1 3.6960 1.5093 2.9423 33 1 0.0889 4.0411 4.0101 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306343381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -61.927516 kcal Electronic energy + Delta-G solvation = -13822.806187 eV Core-core repulsion = 11655.052751 eV Total energy + Delta-G solvation = -2167.753436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.81057 -34.19455 -32.03596 -30.95312 -29.28055 -27.04453 -25.29577 -24.21954 -21.62599 -19.53170 -18.57308 -16.35997 -14.90650 -14.79442 -14.40828 -13.46292 -13.24540 -12.82863 -12.34153 -12.06690 -11.77670 -11.51704 -11.18335 -11.15599 -10.93074 -10.80602 -10.51973 -10.46042 -10.34502 -10.11293 -9.92146 -9.55891 -9.26479 -8.96859 -8.40211 -7.74402 -5.87122 -4.02969 3.33907 3.40667 3.43081 4.47855 4.98325 5.43387 5.50033 5.54032 5.77631 5.84233 5.99260 6.08627 6.23850 6.29932 6.37769 6.40143 6.49450 6.61070 6.68770 6.76254 6.83726 6.92788 6.93487 7.02065 7.18342 7.24158 7.53972 7.86302 8.18871 8.46383 8.76205 9.16543 9.67780 11.14464 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038113 B = 0.013548 C = 0.012464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.475056 B = 2066.268006 C = 2245.960354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.100 3.900 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.140 4.140 7 C 0.228 3.772 8 C -0.138 4.138 9 C -0.531 4.531 10 H 0.056 0.944 11 C 0.081 3.919 12 N -0.861 5.861 13 Si 0.884 3.116 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 O -0.341 6.341 18 H 0.051 0.949 19 H 0.039 0.961 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.010 0.990 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -4.761 -5.691 7.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.059 3.941 4 C -0.211 4.211 5 C -0.186 4.186 6 C -0.178 4.178 7 C 0.191 3.809 8 C -0.196 4.196 9 C -0.568 4.568 10 H 0.074 0.926 11 C -0.123 4.123 12 N -0.497 5.497 13 Si 0.712 3.288 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 O -0.261 6.261 18 H 0.070 0.930 19 H 0.058 0.942 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.029 0.971 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.974 -4.819 -5.411 7.510 hybrid contribution -0.162 1.032 -0.105 1.049 sum 1.812 -3.788 -5.516 6.933 Atomic orbital electron populations 1.21738 0.95937 1.00020 1.02706 1.21560 0.96429 0.95988 1.00763 1.22038 0.92009 0.91661 0.88378 1.22157 1.01438 1.00969 0.96514 1.23245 0.96913 0.98557 0.99876 1.23195 0.99916 0.95289 0.99371 1.19614 0.82662 0.89159 0.89458 1.21970 1.00403 0.95756 1.01472 1.21275 1.21564 0.93238 1.20753 0.92617 1.24973 0.95889 0.96524 0.94958 1.69955 1.25884 1.32338 1.21564 0.86745 0.79234 0.85604 0.77218 1.20672 1.21249 1.19984 1.88778 1.43794 1.59598 1.33887 0.93034 0.94171 0.91433 0.92648 0.92089 0.92358 0.92034 0.93973 0.91887 0.92176 0.92521 0.91926 0.94779 0.89203 0.97083 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.34 37.16 0.35 -2.16 16 2 C -0.11 -1.93 5.29 -26.73 -0.14 -2.07 16 3 C 0.10 2.03 0.86 -89.59 -0.08 1.96 16 4 C -0.15 -2.94 8.36 37.16 0.31 -2.63 16 5 C -0.15 -2.78 6.05 -24.48 -0.15 -2.93 16 6 C -0.14 -2.99 5.69 -24.78 -0.14 -3.13 16 7 C 0.23 5.79 0.82 -91.05 -0.07 5.72 16 8 C -0.14 -3.45 8.51 37.16 0.32 -3.14 16 9 C -0.53 -14.74 8.22 -34.44 -0.28 -15.03 16 10 H 0.06 1.53 7.52 -52.48 -0.39 1.14 16 11 C 0.08 2.28 5.26 -17.82 -0.09 2.19 16 12 N -0.86 -24.99 10.91 55.43 0.60 -24.38 16 13 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 O -0.34 -8.73 9.28 -35.23 -0.33 -9.05 16 18 H 0.05 0.83 6.39 -51.93 -0.33 0.50 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.07 1.34 7.95 -51.93 -0.41 0.93 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.06 1.13 6.38 -51.93 -0.33 0.80 16 24 H 0.06 1.27 7.49 -51.93 -0.39 0.88 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 27 H 0.06 0.98 8.03 -51.93 -0.42 0.56 16 28 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 29 H 0.06 1.33 7.31 -51.93 -0.38 0.95 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 2.48 6.01 -51.93 -0.31 2.17 16 32 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 259.57 15.07 3.91 3.91 Total: -1.00 -29.22 259.57 -6.28 -35.50 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.46 Total: -1.21 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 0.01 Total: -21.21 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.60 Total: -24.38 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.33 Total: -9.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.22 -6.28 -35.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306343381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.426 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds