Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47339 * 2 1 4 4 C 1.52999 * 109.47263 * 120.00169 * 2 1 3 5 5 C 1.53006 * 109.82541 * 59.10849 * 4 2 1 6 6 C 1.54380 * 109.83493 * 179.97438 * 4 2 1 7 7 C 1.55303 * 102.25289 * 140.95617 * 6 4 2 8 8 C 1.54941 * 100.94502 * 325.86964 * 7 6 4 9 9 H 1.09002 * 110.30812 * 277.52770 * 8 7 6 10 10 C 1.50702 * 110.30829 * 155.45712 * 8 7 6 11 11 H 1.07995 * 120.00230 * 1.39187 * 10 8 7 12 12 C 1.37882 * 119.99671 * 181.39203 * 10 8 7 13 13 N 1.31510 * 119.99731 * 180.02562 * 12 10 8 14 14 Si 1.86800 * 120.00189 * 359.97438 * 12 10 8 15 15 H 1.48501 * 109.46631 * 90.00183 * 14 12 10 16 16 H 1.48491 * 109.47453 * 210.00327 * 14 12 10 17 17 H 1.48507 * 109.47273 * 330.00713 * 14 12 10 18 18 O 1.43240 * 109.90311 * 298.18107 * 4 2 1 19 19 H 1.09000 * 109.47322 * 300.00476 * 1 2 3 20 20 H 1.09003 * 109.47163 * 60.00346 * 1 2 3 21 21 H 1.08999 * 109.47694 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46958 * 239.99701 * 2 1 3 23 23 H 1.08998 * 109.46979 * 179.97438 * 3 2 1 24 24 H 1.09003 * 109.46711 * 299.99931 * 3 2 1 25 25 H 1.08990 * 109.46954 * 59.99984 * 3 2 1 26 26 H 1.08989 * 109.47126 * 180.18619 * 5 4 2 27 27 H 1.09000 * 109.46805 * 300.19355 * 5 4 2 28 28 H 1.09002 * 109.46985 * 60.18594 * 5 4 2 29 29 H 1.09009 * 110.84476 * 22.76632 * 6 4 2 30 30 H 1.08995 * 110.84598 * 259.15301 * 6 4 2 31 31 H 1.08998 * 111.12625 * 207.94466 * 7 6 4 32 32 H 1.09005 * 111.12108 * 83.78992 * 7 6 4 33 33 H 0.97008 * 120.00239 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5162 -2.1588 1.2686 6 6 3.5837 -0.7267 1.2573 7 6 3.9063 -0.4891 2.7578 8 6 2.7393 0.4452 3.1652 9 1 2.9664 1.4755 2.8915 10 6 2.4803 0.3432 4.6463 11 1 3.0936 -0.3011 5.2587 12 6 1.4601 1.0725 5.2195 13 7 1.2344 0.9839 6.5120 14 14 0.3996 2.1874 4.1604 15 1 -0.7674 1.4230 3.6514 16 1 -0.0768 3.3354 4.9728 17 1 1.2000 2.6899 3.0148 18 8 1.6028 -0.0291 2.4246 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9562 0.8899 26 1 1.8801 -2.6660 2.1620 27 1 0.4263 -2.1483 1.2751 28 1 1.8692 -2.6860 0.3823 29 1 3.9777 0.0829 0.6429 30 1 3.9700 -1.6903 0.9253 31 1 4.8685 0.0084 2.8788 32 1 3.8759 -1.4232 3.3188 33 1 0.5169 1.4973 6.9155 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306501825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -82.745604 kcal Electronic energy + Delta-G solvation = -13835.011441 eV Core-core repulsion = 11666.355265 eV Total energy + Delta-G solvation = -2168.656176 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.82553 -36.14986 -34.46082 -32.79984 -31.49171 -29.12739 -27.56966 -25.08923 -22.98373 -21.99182 -20.10309 -19.00378 -17.41027 -16.68947 -15.83111 -15.46322 -15.18877 -14.71621 -14.43634 -14.23334 -13.66800 -13.37527 -13.05225 -12.80823 -12.74857 -12.60557 -12.38522 -12.19243 -12.13094 -11.77717 -11.61102 -11.19900 -11.16422 -11.03571 -10.82020 -9.90608 -8.36401 -6.47669 1.32253 1.40416 1.49818 2.35572 2.87481 3.47234 3.81459 3.92534 4.14201 4.20632 4.26249 4.42262 4.58735 4.72644 4.73814 4.81621 4.83555 4.93500 5.01790 5.03595 5.10386 5.13917 5.21604 5.30596 5.40124 5.46936 5.55329 5.59488 5.69425 6.20872 6.54590 6.83578 7.28887 8.78243 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.015887 C = 0.013415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.902232 B = 1762.065185 C = 2086.749880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.150 4.150 4 C 0.088 3.912 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.135 4.135 8 C 0.173 3.827 9 H 0.025 0.975 10 C -0.527 4.527 11 H 0.041 0.959 12 C 0.028 3.972 13 N -0.942 5.942 14 Si 0.961 3.039 15 H -0.279 1.279 16 H -0.294 1.294 17 H -0.249 1.249 18 O -0.398 6.398 19 H 0.026 0.974 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -2.058 -16.275 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.207 4.207 4 C 0.048 3.952 5 C -0.204 4.204 6 C -0.175 4.175 7 C -0.172 4.172 8 C 0.117 3.883 9 H 0.042 0.958 10 C -0.565 4.565 11 H 0.059 0.941 12 C -0.171 4.171 13 N -0.582 5.582 14 Si 0.787 3.213 15 H -0.205 1.205 16 H -0.221 1.221 17 H -0.173 1.173 18 O -0.319 6.319 19 H 0.045 0.955 20 H 0.086 0.914 21 H 0.081 0.919 22 H 0.119 0.881 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.486 -1.977 -16.086 16.275 hybrid contribution -0.482 0.423 0.565 0.855 sum 1.004 -1.554 -15.521 15.630 Atomic orbital electron populations 1.21796 0.95542 1.01894 1.00794 1.21417 0.96172 0.96433 0.97161 1.21908 1.01323 0.96327 1.01120 1.22316 0.93872 0.92406 0.86568 1.22073 1.01344 0.95037 1.01950 1.23237 0.94664 1.03742 0.95880 1.23041 0.98716 0.99502 0.95979 1.20811 0.84444 0.93539 0.89519 0.95776 1.21425 1.16526 1.26366 0.92140 0.94116 1.25868 0.97808 0.97753 0.95687 1.70056 1.32447 1.43248 1.12416 0.85483 0.79458 0.77569 0.78760 1.20539 1.22146 1.17253 1.88475 1.33594 1.73776 1.36085 0.95508 0.91363 0.91915 0.88067 0.91757 0.91170 0.95320 0.94130 0.92831 0.89259 0.89245 0.88694 0.90382 0.92670 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.70 71.98 0.63 -3.50 16 2 C -0.09 -2.63 2.36 -10.80 -0.03 -2.65 16 3 C -0.15 -4.32 8.77 71.98 0.63 -3.69 16 4 C 0.09 2.98 0.62 -10.32 -0.01 2.98 16 5 C -0.15 -4.51 8.35 71.98 0.60 -3.91 16 6 C -0.14 -4.15 5.89 31.85 0.19 -3.96 16 7 C -0.13 -5.24 6.53 32.05 0.21 -5.03 16 8 C 0.17 8.37 2.65 30.51 0.08 8.45 16 9 H 0.02 1.21 7.18 -2.39 -0.02 1.19 16 10 C -0.53 -31.49 9.38 25.60 0.24 -31.25 16 11 H 0.04 2.64 8.01 -2.91 -0.02 2.62 16 12 C 0.03 1.72 5.47 84.66 0.46 2.18 16 13 N -0.94 -60.78 13.96 21.45 0.30 -60.48 16 14 Si 0.96 49.39 26.39 68.60 1.81 51.20 16 15 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 16 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 17 H -0.25 -12.03 6.14 99.48 0.61 -11.42 16 18 O -0.40 -18.39 7.10 -148.98 -1.06 -19.45 16 19 H 0.03 0.95 7.75 -2.39 -0.02 0.93 16 20 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.06 1.66 6.44 -2.39 -0.02 1.65 16 22 H 0.10 2.19 8.14 -2.38 -0.02 2.18 16 23 H 0.06 1.69 6.09 -2.39 -0.01 1.67 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.03 7.27 -2.39 -0.02 1.01 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.68 6.44 -2.39 -0.02 1.67 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 2.37 5.77 -2.38 -0.01 2.35 16 30 H 0.09 2.33 7.82 -2.39 -0.02 2.31 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 32 H 0.05 2.27 8.04 -2.38 -0.02 2.26 16 33 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 Total: -1.00 -68.71 254.49 5.02 -63.68 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 0.96 Total: 5.42 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 3.01 Total: -40.38 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.30 Total: -60.48 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.06 Total: -19.45 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.81 Total: 51.20 kcal Total: -68.71 5.02 -63.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.061 kcal (2) G-P(sol) polarization free energy of solvation -68.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds