Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47442 * 119.99913 * 2 1 3 5 5 C 1.53000 * 109.82321 * 305.56879 * 4 2 1 6 6 C 1.54384 * 109.83305 * 184.58831 * 4 2 1 7 7 C 1.55306 * 102.25479 * 219.12870 * 6 4 2 8 8 C 1.54950 * 100.93883 * 34.13629 * 7 6 4 9 9 H 1.09002 * 110.31226 * 82.46859 * 8 7 6 10 10 C 1.50702 * 110.39155 * 204.59770 * 8 7 6 11 11 H 1.07999 * 119.99699 * 358.55089 * 10 8 7 12 12 C 1.37871 * 120.00037 * 178.55591 * 10 8 7 13 13 N 1.31514 * 119.99996 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00194 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47009 * 89.99535 * 14 12 10 16 16 H 1.48495 * 109.47323 * 209.99951 * 14 12 10 17 17 H 1.48507 * 109.46817 * 329.99767 * 14 12 10 18 18 O 1.43238 * 109.83029 * 66.45684 * 4 2 1 19 19 H 1.08993 * 109.47318 * 299.99426 * 1 2 3 20 20 H 1.08996 * 109.47235 * 60.00316 * 1 2 3 21 21 H 1.09002 * 109.46630 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47686 * 240.00382 * 2 1 3 23 23 H 1.08999 * 109.47531 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47340 * 300.00124 * 3 2 1 25 25 H 1.08997 * 109.47201 * 59.99719 * 3 2 1 26 26 H 1.08998 * 109.47081 * 180.17979 * 5 4 2 27 27 H 1.08996 * 109.47306 * 300.18752 * 5 4 2 28 28 H 1.09003 * 109.46870 * 60.18691 * 5 4 2 29 29 H 1.08998 * 110.84605 * 337.32453 * 6 4 2 30 30 H 1.09002 * 110.84850 * 100.73529 * 6 4 2 31 31 H 1.08997 * 111.12402 * 276.21555 * 7 6 4 32 32 H 1.08996 * 111.12275 * 152.04944 * 7 6 4 33 33 H 0.97004 * 120.00174 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4237 -0.0914 2.4999 6 6 3.5794 -0.6262 1.3170 7 6 3.9742 -2.0360 1.8352 8 6 2.8864 -2.9114 1.1636 9 1 3.1686 -3.1441 0.1368 10 6 2.6760 -4.1811 1.9478 11 1 3.2690 -4.3759 2.8291 12 6 1.7265 -5.0938 1.5401 13 7 1.0040 -4.8563 0.4671 14 14 1.4661 -6.6679 2.5117 15 1 0.4377 -6.4392 3.5582 16 1 1.0103 -7.7448 1.5966 17 1 2.7437 -7.0708 3.1527 18 8 1.6946 -2.1098 1.1837 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.7932 -0.6072 3.3862 27 1 1.7003 0.9617 2.5505 28 1 0.3382 -0.1801 2.4541 29 1 4.0007 -0.4442 0.3283 30 1 3.8898 0.1490 2.0176 31 1 3.9054 -2.0886 2.9218 32 1 4.9704 -2.3157 1.4925 33 1 0.3357 -5.4983 0.1805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306501826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -67.247386 kcal Electronic energy + Delta-G solvation = -13592.821210 eV Core-core repulsion = 11424.837086 eV Total energy + Delta-G solvation = -2167.984123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.93330 -34.74065 -32.29846 -30.88314 -29.14518 -26.91776 -26.25661 -23.71257 -21.55811 -20.17996 -18.02766 -16.44221 -15.39198 -15.11267 -14.48233 -13.63208 -13.42390 -12.84098 -12.63919 -12.16939 -11.92787 -11.85592 -11.57840 -11.24179 -11.06208 -10.88308 -10.69671 -10.47997 -10.38412 -10.14512 -10.04041 -9.54966 -9.52123 -8.98607 -8.50475 -7.77483 -5.95190 -4.07743 3.33819 3.40018 3.42576 4.46359 4.96951 5.31994 5.40023 5.46625 5.67989 5.74520 5.78432 5.95264 6.07409 6.09288 6.18085 6.25145 6.30284 6.40526 6.47858 6.50157 6.66214 6.72279 6.75246 6.85586 6.94135 7.02625 7.15695 7.66711 7.94373 8.34006 8.74433 9.12663 9.62762 11.12230 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.011100 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.285161 B = 2521.847490 C = 2772.039301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.102 3.898 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.148 4.148 8 C 0.211 3.789 9 H 0.025 0.975 10 C -0.533 4.533 11 H 0.061 0.939 12 C 0.078 3.922 13 N -0.863 5.863 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 O -0.347 6.347 19 H 0.049 0.951 20 H 0.039 0.961 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 9.356 0.384 9.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.203 4.203 4 C 0.062 3.938 5 C -0.205 4.205 6 C -0.183 4.183 7 C -0.186 4.186 8 C 0.156 3.844 9 H 0.043 0.957 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.128 4.128 13 N -0.500 5.500 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 O -0.266 6.266 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.445 9.203 0.251 9.320 hybrid contribution 0.002 -0.746 0.482 0.888 sum 1.447 8.457 0.732 8.612 Atomic orbital electron populations 1.21775 0.95373 1.02669 0.99915 1.21383 0.96325 0.94891 0.98929 1.21910 1.00760 0.96614 1.00991 1.21823 0.92294 0.86972 0.92757 1.22101 1.01449 0.98781 0.98202 1.23147 0.96437 0.98252 1.00487 1.23313 1.00159 0.94290 1.00806 1.20484 0.80402 0.88673 0.94878 0.95739 1.21116 1.21457 1.01726 1.12726 0.92102 1.25058 0.95266 0.97844 0.94593 1.70041 1.21693 1.35233 1.22995 0.86663 0.78538 0.83084 0.80067 1.20542 1.21166 1.19818 1.88826 1.32328 1.11197 1.94265 0.93187 0.94167 0.91337 0.91408 0.92893 0.93400 0.92848 0.92772 0.93205 0.92329 0.91894 0.92076 0.91824 0.92290 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.60 37.15 0.32 -2.12 16 2 C -0.10 -1.72 2.38 -90.62 -0.22 -1.94 16 3 C -0.15 -2.06 8.65 37.16 0.32 -1.73 16 4 C 0.10 2.06 0.69 -89.90 -0.06 2.00 16 5 C -0.15 -2.68 7.99 37.16 0.30 -2.38 16 6 C -0.15 -2.69 4.95 -24.78 -0.12 -2.81 16 7 C -0.15 -3.16 6.54 -24.48 -0.16 -3.32 16 8 C 0.21 5.57 3.24 -26.85 -0.09 5.48 16 9 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 10 C -0.53 -15.27 8.80 -34.44 -0.30 -15.57 16 11 H 0.06 1.70 7.77 -52.49 -0.41 1.29 16 12 C 0.08 2.25 5.42 -17.82 -0.10 2.15 16 13 N -0.86 -26.06 12.99 55.43 0.72 -25.34 16 14 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 O -0.35 -9.06 9.57 -35.23 -0.34 -9.39 16 19 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 22 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.05 0.71 6.74 -51.93 -0.35 0.36 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.71 6.61 -51.93 -0.34 0.36 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.75 6.61 -51.93 -0.34 0.41 16 28 H 0.06 1.07 6.39 -51.93 -0.33 0.74 16 29 H 0.06 1.10 7.27 -51.93 -0.38 0.72 16 30 H 0.06 0.98 7.83 -51.93 -0.41 0.58 16 31 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 259.36 15.07 3.91 3.91 Total: -1.00 -30.32 259.36 -6.23 -36.55 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.39 Total: -2.20 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.11 Total: -20.23 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.72 Total: -25.34 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.34 Total: -9.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.32 -6.23 -36.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.700 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds