Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47442 * 119.99913 * 2 1 3 5 5 C 1.53000 * 109.82321 * 305.56879 * 4 2 1 6 6 C 1.54384 * 109.83305 * 184.58831 * 4 2 1 7 7 C 1.55306 * 102.25479 * 219.12870 * 6 4 2 8 8 C 1.54950 * 100.93883 * 34.13629 * 7 6 4 9 9 H 1.09002 * 110.31226 * 82.46859 * 8 7 6 10 10 C 1.50702 * 110.39155 * 204.59770 * 8 7 6 11 11 H 1.07999 * 119.99699 * 358.55089 * 10 8 7 12 12 C 1.37871 * 120.00037 * 178.55591 * 10 8 7 13 13 N 1.31514 * 119.99996 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00194 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47009 * 89.99535 * 14 12 10 16 16 H 1.48495 * 109.47323 * 209.99951 * 14 12 10 17 17 H 1.48507 * 109.46817 * 329.99767 * 14 12 10 18 18 O 1.43238 * 109.83029 * 66.45684 * 4 2 1 19 19 H 1.08993 * 109.47318 * 299.99426 * 1 2 3 20 20 H 1.08996 * 109.47235 * 60.00316 * 1 2 3 21 21 H 1.09002 * 109.46630 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47686 * 240.00382 * 2 1 3 23 23 H 1.08999 * 109.47531 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47340 * 300.00124 * 3 2 1 25 25 H 1.08997 * 109.47201 * 59.99719 * 3 2 1 26 26 H 1.08998 * 109.47081 * 180.17979 * 5 4 2 27 27 H 1.08996 * 109.47306 * 300.18752 * 5 4 2 28 28 H 1.09003 * 109.46870 * 60.18691 * 5 4 2 29 29 H 1.08998 * 110.84605 * 337.32453 * 6 4 2 30 30 H 1.09002 * 110.84850 * 100.73529 * 6 4 2 31 31 H 1.08997 * 111.12402 * 276.21555 * 7 6 4 32 32 H 1.08996 * 111.12275 * 152.04944 * 7 6 4 33 33 H 0.97004 * 120.00174 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4237 -0.0914 2.4999 6 6 3.5794 -0.6262 1.3170 7 6 3.9742 -2.0360 1.8352 8 6 2.8864 -2.9114 1.1636 9 1 3.1686 -3.1441 0.1368 10 6 2.6760 -4.1811 1.9478 11 1 3.2690 -4.3759 2.8291 12 6 1.7265 -5.0938 1.5401 13 7 1.0040 -4.8563 0.4671 14 14 1.4661 -6.6679 2.5117 15 1 0.4377 -6.4392 3.5582 16 1 1.0103 -7.7448 1.5966 17 1 2.7437 -7.0708 3.1527 18 8 1.6946 -2.1098 1.1837 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.7932 -0.6072 3.3862 27 1 1.7003 0.9617 2.5505 28 1 0.3382 -0.1801 2.4541 29 1 4.0007 -0.4442 0.3283 30 1 3.8898 0.1490 2.0176 31 1 3.9054 -2.0886 2.9218 32 1 4.9704 -2.3157 1.4925 33 1 0.3357 -5.4983 0.1805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306501826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -86.003563 kcal Electronic energy + Delta-G solvation = -13593.634538 eV Core-core repulsion = 11424.837086 eV Total energy + Delta-G solvation = -2168.797452 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.59694 -36.38318 -34.39408 -32.62473 -30.76972 -28.52518 -27.80574 -25.46508 -23.17412 -21.99934 -19.57969 -18.57663 -17.05324 -16.77128 -16.44389 -15.20857 -15.05894 -14.50876 -14.08515 -13.81115 -13.69540 -13.46505 -12.97215 -12.83172 -12.70758 -12.48366 -12.38782 -12.16626 -12.08323 -11.86645 -11.60077 -11.20494 -11.07290 -10.89757 -10.66036 -9.69152 -8.13736 -6.34499 1.38743 1.40559 1.50972 2.40419 3.06077 3.58716 3.89739 3.92629 4.22306 4.26300 4.42662 4.46005 4.68860 4.70515 4.76292 4.85016 4.88943 4.97601 5.03746 5.07573 5.13176 5.19399 5.24872 5.31939 5.43730 5.55914 5.63822 5.72919 5.77464 6.21282 6.65372 7.16840 7.42206 8.94203 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049346 B = 0.011100 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.285161 B = 2521.847490 C = 2772.039301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.083 3.917 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.141 4.141 8 C 0.203 3.797 9 H -0.015 1.015 10 C -0.555 4.555 11 H 0.063 0.937 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.960 3.040 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.261 1.261 18 O -0.384 6.384 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.023 0.977 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 11.004 1.377 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.193 4.193 4 C 0.043 3.957 5 C -0.200 4.200 6 C -0.170 4.170 7 C -0.179 4.179 8 C 0.147 3.853 9 H 0.003 0.997 10 C -0.592 4.592 11 H 0.081 0.919 12 C -0.180 4.180 13 N -0.541 5.541 14 Si 0.785 3.215 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.185 1.185 18 O -0.304 6.304 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.068 10.865 1.251 11.130 hybrid contribution -0.194 -1.212 0.136 1.235 sum 1.874 9.653 1.387 9.931 Atomic orbital electron populations 1.21724 0.95373 1.00329 1.01837 1.21370 0.96405 0.97150 0.96640 1.21840 1.01371 0.93456 1.02673 1.22282 0.94012 0.84468 0.94893 1.22067 1.00752 1.00737 0.96398 1.23125 0.94908 0.97215 1.01797 1.23186 0.99122 0.95237 1.00320 1.20336 0.82414 0.89595 0.92953 0.99745 1.21556 1.21519 1.03303 1.12865 0.91902 1.25963 0.94962 1.01509 0.95589 1.70193 1.22487 1.36585 1.24810 0.85547 0.78822 0.78672 0.78505 1.20168 1.20565 1.18484 1.88733 1.32660 1.14501 1.94532 0.91600 0.91871 0.95753 0.94045 0.91882 0.91682 0.91238 0.93966 0.89272 0.93145 0.90942 0.88561 0.91874 0.90912 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.60 71.98 0.62 -4.02 16 2 C -0.10 -3.35 2.38 -10.80 -0.03 -3.37 16 3 C -0.14 -3.33 8.65 71.98 0.62 -2.71 16 4 C 0.08 3.28 0.69 -10.32 -0.01 3.28 16 5 C -0.14 -4.85 7.99 71.98 0.57 -4.27 16 6 C -0.13 -4.61 4.95 31.86 0.16 -4.45 16 7 C -0.14 -5.93 6.54 32.05 0.21 -5.72 16 8 C 0.20 11.05 3.24 30.52 0.10 11.15 16 9 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 10 C -0.56 -32.59 8.80 25.60 0.23 -32.36 16 11 H 0.06 3.54 7.77 -2.91 -0.02 3.52 16 12 C 0.02 1.26 5.42 84.65 0.46 1.72 16 13 N -0.90 -56.59 12.99 21.44 0.28 -56.31 16 14 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 18 O -0.38 -20.67 9.57 -148.98 -1.43 -22.10 16 19 H 0.07 2.01 6.37 -2.39 -0.02 1.99 16 20 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.02 1.01 7.88 -2.39 -0.02 0.99 16 22 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.06 1.43 6.74 -2.39 -0.02 1.41 16 24 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.07 1.49 6.61 -2.39 -0.02 1.48 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 2.31 6.61 -2.39 -0.02 2.29 16 28 H 0.05 1.77 6.39 -2.39 -0.02 1.75 16 29 H 0.07 2.36 7.27 -2.39 -0.02 2.34 16 30 H 0.10 2.68 7.83 -2.39 -0.02 2.66 16 31 H 0.06 2.63 8.05 -2.39 -0.02 2.61 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -68.09 259.36 4.87 -63.21 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.06 Total: 8.57 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 2.93 Total: -40.76 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -1.43 Total: -22.10 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.09 4.87 -63.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.790 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds