Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 C 1.52998 * 109.47346 * 120.00223 * 2 1 3 5 5 C 1.52998 * 109.98865 * 59.62840 * 4 2 1 6 6 C 1.54091 * 109.88062 * 180.71542 * 4 2 1 7 7 C 1.54810 * 104.18924 * 121.45538 * 6 4 2 8 8 C 1.54992 * 102.09142 * 20.87967 * 7 6 4 9 9 H 1.09004 * 110.75617 * 81.54520 * 8 7 6 10 10 C 1.50702 * 110.61797 * 204.47562 * 8 7 6 11 11 H 1.08002 * 120.00299 * 355.52951 * 10 8 7 12 12 C 1.37884 * 119.99942 * 175.24510 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 O 1.43750 * 109.87716 * 298.54895 * 4 2 1 19 19 H 1.09001 * 109.47202 * 299.99492 * 1 2 3 20 20 H 1.09003 * 109.46922 * 59.99952 * 1 2 3 21 21 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47202 * 240.00508 * 2 1 3 23 23 H 1.08997 * 109.47504 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47472 * 300.00333 * 3 2 1 25 25 H 1.09001 * 109.46692 * 60.00196 * 3 2 1 26 26 H 1.08997 * 109.47617 * 299.61556 * 5 4 2 27 27 H 1.09002 * 109.47121 * 59.62389 * 5 4 2 28 28 H 1.09000 * 109.47008 * 179.61907 * 5 4 2 29 29 H 1.09002 * 110.48913 * 240.12672 * 6 4 2 30 30 H 1.09001 * 110.49018 * 2.64275 * 6 4 2 31 31 H 1.09007 * 110.90413 * 262.68144 * 7 6 4 32 32 H 1.08999 * 110.90991 * 139.07867 * 7 6 4 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5290 -2.1633 1.2658 6 6 3.5808 -0.7111 1.2677 7 6 3.9396 0.0029 2.5936 8 6 2.6375 -0.1674 3.4168 9 1 2.6001 -1.1530 3.8811 10 6 2.5244 0.9136 4.4607 11 1 3.3301 1.6199 4.5963 12 6 1.3897 1.0045 5.2388 13 7 0.4086 0.1444 5.0738 14 14 1.2462 2.3492 6.5275 15 1 0.6249 3.5532 5.9195 16 1 0.4015 1.8701 7.6509 17 1 2.5981 2.6934 7.0365 18 8 1.5939 -0.0310 2.4285 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 0.4391 -2.1625 1.2789 27 1 1.8813 -2.6839 0.3753 28 1 1.9026 -2.6709 2.1551 29 1 3.9691 -1.7296 1.2658 30 1 3.9690 -0.1542 0.4149 31 1 4.1559 1.0573 2.4214 32 1 4.7783 -0.4894 3.0860 33 1 -0.3896 0.2082 5.6215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306501827.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -67.120318 kcal Electronic energy + Delta-G solvation = -13709.739127 eV Core-core repulsion = 11541.760514 eV Total energy + Delta-G solvation = -2167.978613 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.93201 -34.39276 -32.25708 -30.81991 -29.55714 -27.20390 -25.79685 -23.49348 -21.36421 -20.13075 -18.40690 -16.55640 -15.02110 -14.76233 -14.15791 -14.11239 -13.49178 -12.84556 -12.58218 -12.37039 -11.72765 -11.58709 -11.52878 -11.24439 -10.94889 -10.87321 -10.56475 -10.49618 -10.37662 -10.10378 -10.00892 -9.51444 -9.42577 -8.96798 -8.53851 -7.88594 -5.96432 -4.08360 3.33482 3.39799 3.42351 4.45671 5.04858 5.36354 5.43647 5.48659 5.69784 5.80563 5.89630 6.01181 6.14935 6.20269 6.21891 6.34761 6.39477 6.48494 6.50171 6.57084 6.72023 6.76737 6.85908 6.90441 6.98476 7.12436 7.16149 7.60945 7.93722 8.31816 8.68883 9.05985 9.61496 11.11185 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.012078 C = 0.011526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.407475 B = 2317.670453 C = 2428.647856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.142 4.142 4 C 0.095 3.905 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.146 4.146 8 C 0.211 3.789 9 H 0.022 0.978 10 C -0.530 4.530 11 H 0.062 0.938 12 C 0.078 3.922 13 N -0.862 5.862 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 O -0.336 6.336 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 -1.380 -8.153 8.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 C -0.199 4.199 4 C 0.054 3.946 5 C -0.214 4.214 6 C -0.186 4.186 7 C -0.184 4.184 8 C 0.155 3.845 9 H 0.040 0.960 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.128 4.128 13 N -0.498 5.498 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 O -0.255 6.255 19 H 0.087 0.913 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.221 -1.333 -8.060 8.466 hybrid contribution 0.059 0.508 0.630 0.812 sum 2.280 -0.825 -7.429 7.815 Atomic orbital electron populations 1.21779 0.95341 1.01245 1.01479 1.21121 0.96152 0.96391 0.96240 1.21784 1.00364 0.96190 1.01590 1.21875 0.91917 0.91450 0.89321 1.22241 1.01808 0.96962 1.00405 1.23035 0.96624 0.99996 0.98960 1.23187 1.00550 0.99638 0.95057 1.20590 0.80886 0.96526 0.86484 0.96042 1.21003 1.03351 1.15813 1.16538 0.91965 1.25056 0.95643 0.95528 0.96559 1.70046 1.06215 1.34967 1.38616 0.86657 0.78085 0.82383 0.81202 1.20535 1.21194 1.19820 1.89256 1.42870 1.72949 1.20472 0.91263 0.94158 0.93170 0.92243 0.93222 0.94147 0.91075 0.92222 0.93685 0.92780 0.92453 0.91962 0.91907 0.92700 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.71 37.16 0.32 -2.12 16 2 C -0.08 -1.41 2.27 -90.62 -0.21 -1.62 16 3 C -0.14 -2.47 8.77 37.16 0.33 -2.14 16 4 C 0.10 1.92 0.54 -90.05 -0.05 1.87 16 5 C -0.16 -2.93 8.23 37.16 0.31 -2.62 16 6 C -0.15 -2.76 5.77 -25.21 -0.15 -2.90 16 7 C -0.15 -3.13 6.55 -24.73 -0.16 -3.29 16 8 C 0.21 5.50 3.11 -26.83 -0.08 5.41 16 9 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.53 -15.03 8.83 -34.44 -0.30 -15.33 16 11 H 0.06 1.72 7.78 -52.49 -0.41 1.31 16 12 C 0.08 2.22 5.42 -17.82 -0.10 2.13 16 13 N -0.86 -25.76 12.94 55.43 0.72 -25.04 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 O -0.34 -8.60 8.80 -35.23 -0.31 -8.91 16 19 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.82 6.48 -51.93 -0.34 0.49 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 26 H 0.06 1.13 6.50 -51.93 -0.34 0.79 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 30 H 0.06 1.04 6.20 -51.93 -0.32 0.72 16 31 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 260.58 15.07 3.93 3.93 Total: -1.00 -29.75 260.58 -6.22 -35.98 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.45 Total: -1.91 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -0.09 Total: -20.62 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.72 Total: -25.04 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.31 Total: -8.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.75 -6.22 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501827.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.143 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds