Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 C 1.52998 * 109.47346 * 120.00223 * 2 1 3 5 5 C 1.52998 * 109.98865 * 59.62840 * 4 2 1 6 6 C 1.54091 * 109.88062 * 180.71542 * 4 2 1 7 7 C 1.54810 * 104.18924 * 121.45538 * 6 4 2 8 8 C 1.54992 * 102.09142 * 20.87967 * 7 6 4 9 9 H 1.09004 * 110.75617 * 81.54520 * 8 7 6 10 10 C 1.50702 * 110.61797 * 204.47562 * 8 7 6 11 11 H 1.08002 * 120.00299 * 355.52951 * 10 8 7 12 12 C 1.37884 * 119.99942 * 175.24510 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 O 1.43750 * 109.87716 * 298.54895 * 4 2 1 19 19 H 1.09001 * 109.47202 * 299.99492 * 1 2 3 20 20 H 1.09003 * 109.46922 * 59.99952 * 1 2 3 21 21 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47202 * 240.00508 * 2 1 3 23 23 H 1.08997 * 109.47504 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47472 * 300.00333 * 3 2 1 25 25 H 1.09001 * 109.46692 * 60.00196 * 3 2 1 26 26 H 1.08997 * 109.47617 * 299.61556 * 5 4 2 27 27 H 1.09002 * 109.47121 * 59.62389 * 5 4 2 28 28 H 1.09000 * 109.47008 * 179.61907 * 5 4 2 29 29 H 1.09002 * 110.48913 * 240.12672 * 6 4 2 30 30 H 1.09001 * 110.49018 * 2.64275 * 6 4 2 31 31 H 1.09007 * 110.90413 * 262.68144 * 7 6 4 32 32 H 1.08999 * 110.90991 * 139.07867 * 7 6 4 33 33 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5290 -2.1633 1.2658 6 6 3.5808 -0.7111 1.2677 7 6 3.9396 0.0029 2.5936 8 6 2.6375 -0.1674 3.4168 9 1 2.6001 -1.1530 3.8811 10 6 2.5244 0.9136 4.4607 11 1 3.3301 1.6199 4.5963 12 6 1.3897 1.0045 5.2388 13 7 0.4086 0.1444 5.0738 14 14 1.2462 2.3492 6.5275 15 1 0.6249 3.5532 5.9195 16 1 0.4015 1.8701 7.6509 17 1 2.5981 2.6934 7.0365 18 8 1.5939 -0.0310 2.4285 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 0.4391 -2.1625 1.2789 27 1 1.8813 -2.6839 0.3753 28 1 1.9026 -2.6709 2.1551 29 1 3.9691 -1.7296 1.2658 30 1 3.9690 -0.1542 0.4149 31 1 4.1559 1.0573 2.4214 32 1 4.7783 -0.4894 3.0860 33 1 -0.3896 0.2082 5.6215 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306501827.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -85.055743 kcal Electronic energy + Delta-G solvation = -13710.516866 eV Core-core repulsion = 11541.760514 eV Total energy + Delta-G solvation = -2168.756352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59571 -36.06550 -34.30845 -32.54869 -31.15909 -28.93205 -27.43991 -25.26841 -22.95024 -21.92896 -19.96009 -18.65345 -16.76340 -16.68179 -15.92788 -15.59702 -15.04582 -14.52573 -14.22797 -14.12898 -13.53740 -13.19091 -13.02733 -12.82289 -12.66718 -12.50080 -12.34104 -12.10472 -12.07303 -11.84608 -11.58925 -11.09085 -11.01111 -10.88722 -10.67490 -9.78310 -8.13386 -6.32836 1.39526 1.41134 1.51370 2.41090 3.09132 3.65275 3.90485 4.00889 4.22091 4.28252 4.37742 4.48519 4.68819 4.74189 4.78427 4.86908 4.91360 4.99507 5.05839 5.09023 5.11422 5.16730 5.28493 5.37920 5.48071 5.57179 5.66478 5.72976 5.78383 6.22407 6.64815 7.08492 7.42027 8.94690 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.012078 C = 0.011526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.407475 B = 2317.670453 C = 2428.647856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.137 4.137 4 C 0.078 3.922 5 C -0.152 4.152 6 C -0.138 4.138 7 C -0.139 4.139 8 C 0.203 3.797 9 H -0.015 1.015 10 C -0.552 4.552 11 H 0.063 0.937 12 C 0.023 3.977 13 N -0.900 5.900 14 Si 0.959 3.041 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.262 1.262 18 O -0.368 6.368 19 H 0.026 0.974 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -1.077 -9.818 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.195 4.195 4 C 0.037 3.963 5 C -0.210 4.210 6 C -0.176 4.176 7 C -0.177 4.177 8 C 0.148 3.852 9 H 0.003 0.997 10 C -0.589 4.589 11 H 0.081 0.919 12 C -0.178 4.178 13 N -0.538 5.538 14 Si 0.783 3.217 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.186 1.186 18 O -0.288 6.288 19 H 0.045 0.955 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.115 0.885 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.164 -1.030 -9.733 10.286 hybrid contribution -0.232 0.371 1.100 1.184 sum 2.931 -0.659 -8.633 9.141 Atomic orbital electron populations 1.21731 0.95580 1.01431 1.00713 1.21197 0.96017 0.96507 0.96057 1.21730 1.00881 0.95986 1.00863 1.22305 0.93320 0.92049 0.88579 1.22206 1.01104 0.96419 1.01261 1.23008 0.95316 1.01136 0.98098 1.23053 0.98513 1.00086 0.96075 1.20424 0.83656 0.93918 0.87243 0.99709 1.21434 1.03504 1.16268 1.17734 0.91931 1.25919 0.95272 0.97860 0.98794 1.70188 1.06784 1.36911 1.39883 0.85570 0.78514 0.79179 0.78426 1.20229 1.20615 1.18589 1.89182 1.43441 1.74000 1.22151 0.95469 0.91374 0.92572 0.88545 0.92295 0.91425 0.95191 0.93319 0.89783 0.94849 0.90586 0.89239 0.92232 0.91450 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 8.71 71.98 0.63 -3.94 16 2 C -0.08 -2.58 2.27 -10.79 -0.02 -2.61 16 3 C -0.14 -4.47 8.77 71.98 0.63 -3.84 16 4 C 0.08 3.04 0.54 -10.43 -0.01 3.03 16 5 C -0.15 -5.51 8.23 71.98 0.59 -4.92 16 6 C -0.14 -4.78 5.77 31.58 0.18 -4.60 16 7 C -0.14 -5.86 6.55 31.89 0.21 -5.65 16 8 C 0.20 10.91 3.11 30.53 0.10 11.00 16 9 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 10 C -0.55 -32.12 8.83 25.60 0.23 -31.89 16 11 H 0.06 3.51 7.78 -2.91 -0.02 3.49 16 12 C 0.02 1.37 5.42 84.66 0.46 1.83 16 13 N -0.90 -55.66 12.94 21.45 0.28 -55.38 16 14 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 18 O -0.37 -19.27 8.80 -148.98 -1.31 -20.58 16 19 H 0.03 1.10 7.74 -2.39 -0.02 1.08 16 20 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.06 1.76 6.48 -2.39 -0.02 1.75 16 22 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 23 H 0.06 1.78 6.37 -2.39 -0.02 1.76 16 24 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.03 1.20 7.66 -2.39 -0.02 1.18 16 26 H 0.05 1.83 6.50 -2.39 -0.02 1.81 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.35 7.70 -2.39 -0.02 2.33 16 30 H 0.09 2.62 6.20 -2.39 -0.01 2.60 16 31 H 0.06 2.51 8.05 -2.38 -0.02 2.49 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -66.38 260.58 5.04 -61.34 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.06 Total: 9.07 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 2.99 Total: -41.59 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.38 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.31 Total: -20.58 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.38 5.04 -61.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501827.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.713 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds