Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 C 1.53005 * 109.47039 * 119.99559 * 2 1 3 5 5 C 1.53001 * 109.99303 * 305.37382 * 4 2 1 6 6 C 1.54096 * 109.88019 * 184.28494 * 4 2 1 7 7 C 1.54985 * 104.25395 * 238.41749 * 6 4 2 8 8 C 1.54997 * 102.00939 * 339.32946 * 7 6 4 9 9 H 1.08999 * 110.62225 * 278.24617 * 8 7 6 10 10 C 1.50703 * 110.61920 * 155.41038 * 8 7 6 11 11 H 1.08002 * 119.99685 * 2.17338 * 10 8 7 12 12 C 1.37877 * 120.00216 * 182.18151 * 10 8 7 13 13 N 1.31516 * 120.00069 * 179.97438 * 12 10 8 14 14 Si 1.86800 * 119.99806 * 359.97438 * 12 10 8 15 15 H 1.48503 * 109.46845 * 90.00621 * 14 12 10 16 16 H 1.48503 * 109.47399 * 210.00111 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00717 * 14 12 10 18 18 O 1.43749 * 109.87532 * 66.45294 * 4 2 1 19 19 H 1.09007 * 109.47192 * 300.00052 * 1 2 3 20 20 H 1.08998 * 109.47169 * 60.00102 * 1 2 3 21 21 H 1.08993 * 109.47241 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47223 * 239.99607 * 2 1 3 23 23 H 1.08998 * 109.47325 * 60.00236 * 3 2 1 24 24 H 1.09000 * 109.46568 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47059 * 299.99387 * 3 2 1 26 26 H 1.08996 * 109.46914 * 180.38575 * 5 4 2 27 27 H 1.09004 * 109.46729 * 300.38001 * 5 4 2 28 28 H 1.09000 * 109.47454 * 60.38029 * 5 4 2 29 29 H 1.09005 * 110.48890 * 357.22393 * 6 4 2 30 30 H 1.08996 * 110.49127 * 119.73960 * 6 4 2 31 31 H 1.09005 * 111.04852 * 221.11567 * 7 6 4 32 32 H 1.08991 * 110.84676 * 97.45453 * 7 6 4 33 33 H 0.97000 * 119.99667 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.4296 -0.0911 2.5029 6 6 3.5771 -0.6336 1.3142 7 6 4.0430 -2.1116 1.3358 8 6 2.7658 -2.8453 1.8184 9 1 2.6785 -2.7906 2.9035 10 6 2.7733 -4.2809 1.3601 11 1 3.6173 -4.6670 0.8078 12 6 1.7026 -5.1014 1.6457 13 7 1.7089 -6.3541 1.2452 14 14 0.2431 -4.4336 2.6013 15 1 -0.7556 -3.8762 1.6541 16 1 -0.3781 -5.5303 3.3867 17 1 0.7024 -3.3635 3.5228 18 8 1.6937 -2.1148 1.1847 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.6767 1.9564 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.8037 -0.6065 3.3875 27 1 1.7065 0.9621 2.5517 28 1 0.3440 -0.1799 2.4624 29 1 3.9676 -0.1219 0.4345 30 1 3.8921 -0.1216 2.2234 31 1 4.8627 -2.2535 2.0402 32 1 4.3281 -2.4431 0.3374 33 1 0.9558 -6.9313 1.4465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306501828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -83.190224 kcal Electronic energy + Delta-G solvation = -13688.196470 eV Core-core repulsion = 11519.521014 eV Total energy + Delta-G solvation = -2168.675457 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81036 -36.51580 -34.56641 -32.76078 -30.96096 -28.90956 -27.92633 -25.43113 -23.12468 -21.89666 -19.70780 -19.07716 -17.05670 -16.94055 -16.30601 -15.58693 -14.89366 -14.82466 -14.59447 -13.93323 -13.80311 -13.63192 -13.04289 -12.91923 -12.83660 -12.39331 -12.34110 -12.15391 -12.00844 -11.76411 -11.67153 -11.26215 -11.12405 -11.09301 -10.85169 -10.10444 -8.38556 -6.50337 1.31080 1.38901 1.48276 2.33786 2.84725 3.46754 3.83554 3.88503 4.12138 4.21085 4.34787 4.40468 4.53718 4.60774 4.65244 4.79172 4.87214 4.94199 4.98686 5.01158 5.10994 5.12791 5.20335 5.30248 5.34568 5.46611 5.50744 5.60589 5.63541 6.19059 6.47770 6.71708 7.24990 8.76043 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041543 B = 0.013633 C = 0.011999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.842464 B = 2053.422124 C = 2333.050763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.083 3.917 5 C -0.161 4.161 6 C -0.135 4.135 7 C -0.135 4.135 8 C 0.167 3.833 9 H 0.025 0.975 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.027 3.973 13 N -0.939 5.939 14 Si 0.962 3.038 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.252 1.252 18 O -0.399 6.399 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.026 0.974 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 17.098 1.144 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.196 4.196 4 C 0.043 3.957 5 C -0.218 4.218 6 C -0.173 4.173 7 C -0.173 4.173 8 C 0.111 3.889 9 H 0.043 0.957 10 C -0.563 4.563 11 H 0.061 0.939 12 C -0.172 4.172 13 N -0.579 5.579 14 Si 0.788 3.212 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.176 1.176 18 O -0.320 6.320 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.542 16.865 1.053 16.907 hybrid contribution -0.495 -0.684 0.231 0.875 sum -1.037 16.182 1.284 16.266 Atomic orbital electron populations 1.21816 0.95291 1.00582 1.02311 1.21187 0.96271 0.97055 0.96070 1.21891 1.01607 0.93239 1.02863 1.22349 0.94389 0.83250 0.95671 1.22337 1.01114 1.01712 0.96656 1.23069 0.94459 0.96043 1.03701 1.22967 0.98070 0.95234 1.01042 1.20998 0.84987 0.90315 0.92555 0.95742 1.21270 1.04544 0.93635 1.36849 0.93891 1.25892 1.01014 0.94528 0.95780 1.70046 1.32805 1.07231 1.47774 0.85454 0.79198 0.77507 0.79022 1.20462 1.21732 1.17639 1.88975 1.45986 1.16940 1.80121 0.91530 0.91409 0.95451 0.92746 0.91290 0.91569 0.91378 0.93837 0.88844 0.92731 0.89193 0.89306 0.90439 0.92894 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.61 71.98 0.62 -3.55 16 2 C -0.09 -2.58 2.41 -10.79 -0.03 -2.61 16 3 C -0.14 -2.85 8.64 71.98 0.62 -2.23 16 4 C 0.08 2.87 0.61 -10.42 -0.01 2.86 16 5 C -0.16 -4.81 7.86 71.98 0.57 -4.24 16 6 C -0.14 -4.18 5.65 31.64 0.18 -4.00 16 7 C -0.14 -5.39 6.57 31.96 0.21 -5.18 16 8 C 0.17 8.25 2.47 30.53 0.08 8.33 16 9 H 0.03 1.23 7.19 -2.39 -0.02 1.22 16 10 C -0.53 -31.65 9.40 25.60 0.24 -31.41 16 11 H 0.04 2.80 8.02 -2.91 -0.02 2.78 16 12 C 0.03 1.68 5.47 84.65 0.46 2.14 16 13 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 14 Si 0.96 49.31 26.44 68.60 1.81 51.13 16 15 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 17 H -0.25 -12.20 6.53 99.48 0.65 -11.55 16 18 O -0.40 -18.95 8.29 -148.98 -1.23 -20.18 16 19 H 0.07 1.73 6.39 -2.38 -0.02 1.71 16 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.03 0.97 7.88 -2.39 -0.02 0.95 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.07 1.24 6.61 -2.39 -0.02 1.22 16 24 H 0.07 1.25 6.28 -2.39 -0.01 1.24 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.08 6.61 -2.39 -0.02 2.06 16 28 H 0.05 1.67 6.42 -2.39 -0.02 1.65 16 29 H 0.09 2.39 6.19 -2.38 -0.01 2.37 16 30 H 0.09 2.29 7.70 -2.39 -0.02 2.28 16 31 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.05 2.24 8.05 -2.39 -0.02 2.22 16 33 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -68.97 253.48 4.83 -64.14 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.01 Total: 4.99 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 2.94 Total: -39.88 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.23 Total: -20.18 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.81 Total: 51.13 kcal Total: -68.97 4.83 -64.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306501828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.047 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds