Wall clock time and date at job start Mon Mar 30 2020 02:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 H 1.08996 * 109.48185 * 305.02331 * 4 2 1 6 6 C 1.53095 * 109.48099 * 184.99677 * 4 2 1 7 7 C 1.53181 * 109.16550 * 182.40664 * 6 4 2 8 8 C 1.53181 * 109.03270 * 56.98507 * 7 6 4 9 9 C 1.53090 * 109.16396 * 303.01859 * 8 7 6 10 10 H 1.09000 * 109.48158 * 177.59966 * 9 8 7 11 11 C 1.50701 * 109.47974 * 297.62772 * 9 8 7 12 12 H 1.07994 * 120.00472 * 0.02562 * 11 9 8 13 13 C 1.37887 * 119.99755 * 180.02562 * 11 9 8 14 14 N 1.31515 * 119.99695 * 180.02562 * 13 11 9 15 15 Si 1.86803 * 120.00008 * 359.97438 * 13 11 9 16 16 H 1.48495 * 109.46663 * 90.00342 * 15 13 11 17 17 H 1.48500 * 109.46788 * 210.00306 * 15 13 11 18 18 H 1.48503 * 109.47137 * 330.00111 * 15 13 11 19 19 O 1.42904 * 109.41789 * 57.60897 * 9 8 7 20 20 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 24 24 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08991 * 109.52698 * 302.31948 * 6 4 2 28 28 H 1.09002 * 109.51966 * 62.44313 * 6 4 2 29 29 H 1.09000 * 109.54454 * 176.85295 * 7 6 4 30 30 H 1.08996 * 109.54479 * 297.03025 * 7 6 4 31 31 H 1.08999 * 109.52010 * 62.92668 * 8 7 6 32 32 H 1.08994 * 109.52325 * 183.04992 * 8 7 6 33 33 H 0.97000 * 119.99849 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6051 -1.7196 -1.2956 6 6 3.5657 -0.8312 -1.1883 7 6 4.0733 -1.5001 -2.4694 8 6 3.5968 -0.6895 -3.6787 9 6 2.0699 -0.5850 -3.6436 10 1 1.7281 0.0269 -4.4784 11 6 1.4692 -1.9629 -3.7512 12 1 2.1115 -2.8269 -3.8357 13 6 0.0994 -2.1205 -3.7417 14 7 -0.4248 -3.3230 -3.8351 15 14 -1.0117 -0.6260 -3.5948 16 1 -1.3295 -0.1104 -4.9506 17 1 -2.2688 -1.0099 -2.9038 18 1 -0.3199 0.4302 -2.8130 19 8 1.6631 0.0174 -2.4132 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 -0.8899 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 3.9995 0.1649 -1.1009 28 1 3.8534 -1.4308 -0.3247 29 1 5.1628 -1.5311 -2.4576 30 1 3.6803 -2.5149 -2.5313 31 1 4.0313 0.3094 -3.6417 32 1 3.9076 -1.1881 -4.5968 33 1 -1.3884 -3.4339 -3.8281 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306517527.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:08 Heat of formation + Delta-G solvation = -67.973328 kcal Electronic energy + Delta-G solvation = -13956.715090 eV Core-core repulsion = 11788.699488 eV Total energy + Delta-G solvation = -2168.015602 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73812 -34.72836 -32.58295 -32.18235 -29.41749 -26.66221 -25.84666 -23.50505 -21.91323 -19.64673 -18.64271 -16.55846 -15.54108 -14.79436 -14.22541 -13.85464 -13.70138 -13.33628 -12.78422 -12.50662 -12.23777 -11.87449 -11.72175 -11.41587 -10.92173 -10.77973 -10.63136 -10.33901 -10.21840 -9.96584 -9.81984 -9.52472 -9.47089 -8.64311 -8.55514 -7.80662 -6.06759 -4.14204 3.40665 3.50080 3.73475 4.56825 4.95900 5.34968 5.37658 5.50718 5.65712 5.83231 5.86765 5.89465 6.10649 6.16821 6.26263 6.29492 6.43592 6.44131 6.50025 6.51773 6.71429 6.77337 6.89814 6.91341 6.93042 7.04865 7.18261 7.42844 7.70909 8.30614 8.76881 8.96710 9.58655 11.03882 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.019909 C = 0.014416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.545246 B = 1406.061399 C = 1941.784907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.103 3.897 5 H 0.070 0.930 6 C -0.141 4.141 7 C -0.110 4.110 8 C -0.130 4.130 9 C 0.174 3.826 10 H 0.056 0.944 11 C -0.546 4.546 12 H 0.073 0.927 13 C 0.084 3.916 14 N -0.896 5.896 15 Si 0.857 3.143 16 H -0.290 1.290 17 H -0.295 1.295 18 H -0.208 1.208 19 O -0.385 6.385 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 6.820 6.281 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.196 4.196 4 C 0.045 3.955 5 H 0.088 0.912 6 C -0.179 4.179 7 C -0.148 4.148 8 C -0.168 4.168 9 C 0.118 3.882 10 H 0.074 0.926 11 C -0.584 4.584 12 H 0.091 0.909 13 C -0.120 4.120 14 N -0.533 5.533 15 Si 0.684 3.316 16 H -0.217 1.217 17 H -0.222 1.222 18 H -0.131 1.131 19 O -0.306 6.306 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.479 6.902 6.293 10.359 hybrid contribution -0.543 0.191 -0.087 0.583 sum 3.936 7.094 6.206 10.214 Atomic orbital electron populations 1.21907 0.95524 1.01752 1.01441 1.21128 0.95989 0.96459 0.96987 1.21753 1.00324 0.96385 1.01135 1.21686 0.91829 0.96397 0.85611 0.91199 1.22146 0.98206 0.99981 0.97560 1.21447 0.97874 1.00694 0.94756 1.21950 0.99022 0.98047 0.97753 1.20090 0.90104 0.94340 0.83648 0.92584 1.21429 0.92360 0.92408 1.52173 0.90909 1.24976 0.98355 0.95826 0.92839 1.69960 1.11937 1.22127 1.49297 0.87309 0.79527 0.86117 0.78658 1.21695 1.22216 1.13087 1.87989 1.78458 1.50128 1.13999 0.91451 0.92936 0.93919 0.91519 0.91814 0.94129 0.93171 0.92496 0.92857 0.94091 0.90997 0.94001 0.92355 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.09 37.16 0.34 -2.32 16 2 C -0.09 -1.51 2.75 -90.62 -0.25 -1.76 16 3 C -0.14 -2.17 8.75 37.16 0.33 -1.84 16 4 C 0.10 2.10 2.05 -26.68 -0.05 2.04 16 5 H 0.07 1.66 7.09 -51.93 -0.37 1.29 16 6 C -0.14 -2.55 5.22 -26.59 -0.14 -2.68 16 7 C -0.11 -2.10 5.77 -26.54 -0.15 -2.25 16 8 C -0.13 -2.64 5.59 -26.59 -0.15 -2.78 16 9 C 0.17 4.11 2.65 -27.84 -0.07 4.04 16 10 H 0.06 1.34 7.57 -51.93 -0.39 0.95 16 11 C -0.55 -15.00 7.18 -34.44 -0.25 -15.25 16 12 H 0.07 2.17 7.11 -52.49 -0.37 1.79 16 13 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 14 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 15 Si 0.86 21.54 26.31 -169.99 -4.47 17.06 16 16 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 18 H -0.21 -4.96 3.86 56.52 0.22 -4.74 16 19 O -0.39 -8.71 5.75 -35.23 -0.20 -8.92 16 20 H 0.07 1.33 5.55 -51.93 -0.29 1.04 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.73 6.52 -51.93 -0.34 0.40 16 27 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.52 6.85 -51.93 -0.36 1.17 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 246.78 15.07 3.72 3.72 Total: -1.00 -29.21 246.78 -6.23 -35.44 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.55 Total: -0.28 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -0.50 Total: -20.52 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.20 Total: -8.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.47 Total: 17.06 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.21 -6.23 -35.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517527.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.538 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds