Wall clock time and date at job start Mon Mar 30 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47070 * 120.00200 * 2 1 3 5 5 H 1.08997 * 109.48448 * 60.02390 * 4 2 1 6 6 C 1.53096 * 109.48795 * 180.02562 * 4 2 1 7 7 C 1.53175 * 109.16517 * 177.59743 * 6 4 2 8 8 C 1.53178 * 109.03706 * 303.02070 * 7 6 4 9 9 C 1.53099 * 109.16363 * 56.97638 * 8 7 6 10 10 H 1.08996 * 109.48579 * 62.38250 * 9 8 7 11 11 C 1.50695 * 109.47780 * 182.41257 * 9 8 7 12 12 H 1.08004 * 120.00546 * 0.22023 * 11 9 8 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11 19 19 O 1.42901 * 109.41214 * 302.39243 * 9 8 7 20 20 H 1.08994 * 109.46755 * 299.99720 * 1 2 3 21 21 H 1.09000 * 109.46986 * 59.99910 * 1 2 3 22 22 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46977 * 240.00228 * 2 1 3 24 24 H 1.09000 * 109.46842 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47332 * 299.99878 * 3 2 1 26 26 H 1.08994 * 109.47145 * 60.00518 * 3 2 1 27 27 H 1.09000 * 109.51886 * 297.49993 * 6 4 2 28 28 H 1.08997 * 109.52416 * 57.62933 * 6 4 2 29 29 H 1.09003 * 109.54394 * 62.88132 * 7 6 4 30 30 H 1.09000 * 109.54919 * 183.15076 * 7 6 4 31 31 H 1.09003 * 109.51844 * 297.07460 * 8 7 6 32 32 H 1.08991 * 109.52580 * 176.88391 * 8 7 6 33 33 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6772 -1.7491 1.2491 6 6 3.5710 -0.7209 1.2499 7 6 4.0734 -1.3913 2.5323 8 6 3.4913 -0.6543 3.7424 9 6 1.9634 -0.6572 3.6454 10 1 1.5990 -1.6840 3.6770 11 6 1.3851 0.1172 4.8015 12 1 2.0410 0.5697 5.5306 13 6 0.0185 0.2525 4.9259 14 7 -0.7801 -0.2947 4.0357 15 14 -0.6984 1.2119 6.3594 16 1 0.4035 1.7231 7.2135 17 1 -1.4938 2.3543 5.8420 18 1 -1.5750 0.3215 7.1619 19 8 1.5644 -0.0474 2.4162 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.9357 -1.2727 0.3835 28 1 3.9351 0.3056 1.2078 29 1 3.7510 -2.4325 2.5498 30 1 5.1619 -1.3447 2.5659 31 1 3.8538 0.3736 3.7517 32 1 3.7991 -1.1583 4.6585 33 1 -1.7415 -0.1998 4.1235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306517531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:10 Heat of formation + Delta-G solvation = -75.603292 kcal Electronic energy + Delta-G solvation = -13620.670083 eV Core-core repulsion = 11452.323620 eV Total energy + Delta-G solvation = -2168.346462 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.43749 -34.58630 -32.64048 -32.04690 -29.22457 -26.54651 -25.58287 -23.46080 -21.67925 -19.63992 -18.74619 -16.57503 -14.94488 -14.76254 -14.26046 -13.88902 -13.61929 -13.50927 -12.59010 -12.52690 -11.93414 -11.60758 -11.29316 -11.06902 -10.96261 -10.81044 -10.64243 -10.31996 -10.23552 -10.12114 -9.98806 -9.67013 -9.27792 -8.77655 -8.42752 -7.74588 -5.96481 -4.08031 3.32068 3.40089 3.43887 4.45280 5.04351 5.36664 5.50898 5.54822 5.69460 5.79849 5.89148 5.95188 6.16518 6.27057 6.28953 6.35656 6.39139 6.55965 6.57905 6.61433 6.73745 6.87464 6.90109 6.94438 6.99351 7.08972 7.27259 7.58752 7.94661 8.35720 8.85614 9.23575 9.61950 11.10908 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.013413 C = 0.010757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.093481 B = 2086.984519 C = 2602.235530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.089 3.911 5 H 0.036 0.964 6 C -0.148 4.148 7 C -0.120 4.120 8 C -0.143 4.143 9 C 0.219 3.781 10 H 0.011 0.989 11 C -0.525 4.525 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.858 5.858 15 Si 0.889 3.111 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.284 1.284 19 O -0.346 6.346 20 H 0.077 0.923 21 H 0.036 0.964 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -0.335 -6.084 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.197 4.197 4 C 0.030 3.970 5 H 0.054 0.946 6 C -0.186 4.186 7 C -0.158 4.158 8 C -0.181 4.181 9 C 0.163 3.837 10 H 0.028 0.972 11 C -0.562 4.562 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.495 5.495 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 O -0.265 6.265 20 H 0.096 0.904 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.654 -0.197 -6.140 7.707 hybrid contribution -0.217 0.199 0.689 0.749 sum 4.437 0.002 -5.451 7.028 Atomic orbital electron populations 1.21693 0.94766 1.01348 1.01698 1.21037 0.96552 0.96405 0.96020 1.21775 1.00048 0.96382 1.01529 1.21791 0.90950 0.95315 0.88958 0.94603 1.22262 0.98425 1.00860 0.97013 1.21612 0.98803 0.99302 0.96087 1.22250 1.00559 0.99378 0.95918 1.19657 0.87025 0.94116 0.82870 0.97167 1.21044 0.91592 1.36517 1.07089 0.91952 1.25049 0.97293 0.94773 0.95593 1.70053 1.03239 1.42362 1.33809 0.86606 0.79182 0.79991 0.82581 1.19702 1.20907 1.21008 1.88318 1.73997 1.52225 1.11956 0.90382 0.94477 0.93579 0.92251 0.93374 0.94161 0.91265 0.93054 0.91560 0.92909 0.93426 0.92643 0.92734 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.05 37.16 0.34 -2.25 16 2 C -0.08 -1.47 2.81 -90.62 -0.25 -1.73 16 3 C -0.14 -2.40 8.70 37.16 0.32 -2.08 16 4 C 0.09 1.85 2.38 -26.68 -0.06 1.78 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.15 -2.66 5.13 -26.59 -0.14 -2.80 16 7 C -0.12 -2.22 6.03 -26.55 -0.16 -2.38 16 8 C -0.14 -3.11 5.36 -26.59 -0.14 -3.25 16 9 C 0.22 5.72 2.50 -27.83 -0.07 5.65 16 10 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 11 C -0.53 -14.88 8.79 -34.44 -0.30 -15.18 16 12 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 14 N -0.86 -25.17 12.84 55.43 0.71 -24.45 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 O -0.35 -8.80 8.09 -35.23 -0.29 -9.09 16 20 H 0.08 1.75 7.68 -51.93 -0.40 1.35 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 24 H 0.05 0.76 6.38 -51.93 -0.33 0.43 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.37 7.68 -51.93 -0.40 0.97 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.19 6.31 -51.93 -0.33 0.86 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 261.60 15.07 3.94 3.94 Total: -1.00 -29.18 261.60 -6.87 -36.05 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.65 Total: -2.81 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.57 Total: -20.09 kcal Atomic # 7 Polarization: -25.17 SS G_CDS: 0.71 Total: -24.45 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.29 Total: -9.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.18 -6.87 -36.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.555 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds