Wall clock time and date at job start Mon Mar 30 2020 02:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47070 * 120.00200 * 2 1 3 5 5 H 1.08997 * 109.48448 * 60.02390 * 4 2 1 6 6 C 1.53096 * 109.48795 * 180.02562 * 4 2 1 7 7 C 1.53175 * 109.16517 * 177.59743 * 6 4 2 8 8 C 1.53178 * 109.03706 * 303.02070 * 7 6 4 9 9 C 1.53099 * 109.16363 * 56.97638 * 8 7 6 10 10 H 1.08996 * 109.48579 * 62.38250 * 9 8 7 11 11 C 1.50695 * 109.47780 * 182.41257 * 9 8 7 12 12 H 1.08004 * 120.00546 * 0.22023 * 11 9 8 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11 19 19 O 1.42901 * 109.41214 * 302.39243 * 9 8 7 20 20 H 1.08994 * 109.46755 * 299.99720 * 1 2 3 21 21 H 1.09000 * 109.46986 * 59.99910 * 1 2 3 22 22 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46977 * 240.00228 * 2 1 3 24 24 H 1.09000 * 109.46842 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47332 * 299.99878 * 3 2 1 26 26 H 1.08994 * 109.47145 * 60.00518 * 3 2 1 27 27 H 1.09000 * 109.51886 * 297.49993 * 6 4 2 28 28 H 1.08997 * 109.52416 * 57.62933 * 6 4 2 29 29 H 1.09003 * 109.54394 * 62.88132 * 7 6 4 30 30 H 1.09000 * 109.54919 * 183.15076 * 7 6 4 31 31 H 1.09003 * 109.51844 * 297.07460 * 8 7 6 32 32 H 1.08991 * 109.52580 * 176.88391 * 8 7 6 33 33 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6772 -1.7491 1.2491 6 6 3.5710 -0.7209 1.2499 7 6 4.0734 -1.3913 2.5323 8 6 3.4913 -0.6543 3.7424 9 6 1.9634 -0.6572 3.6454 10 1 1.5990 -1.6840 3.6770 11 6 1.3851 0.1172 4.8015 12 1 2.0410 0.5697 5.5306 13 6 0.0185 0.2525 4.9259 14 7 -0.7801 -0.2947 4.0357 15 14 -0.6984 1.2119 6.3594 16 1 0.4035 1.7231 7.2135 17 1 -1.4938 2.3543 5.8420 18 1 -1.5750 0.3215 7.1619 19 8 1.5644 -0.0474 2.4162 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.9357 -1.2727 0.3835 28 1 3.9351 0.3056 1.2078 29 1 3.7510 -2.4325 2.5498 30 1 5.1619 -1.3447 2.5659 31 1 3.8538 0.3736 3.7517 32 1 3.7991 -1.1583 4.6585 33 1 -1.7415 -0.1998 4.1235 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306517531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:10 Heat of formation + Delta-G solvation = -92.681021 kcal Electronic energy + Delta-G solvation = -13621.410629 eV Core-core repulsion = 11452.323620 eV Total energy + Delta-G solvation = -2169.087008 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14414 -36.24461 -34.51377 -33.92795 -31.01125 -28.05530 -27.45748 -25.16875 -23.49827 -21.25222 -20.36352 -18.67299 -16.77893 -16.61932 -16.02359 -15.51574 -15.23405 -14.99093 -14.47964 -14.21826 -13.61938 -13.15326 -12.91347 -12.81971 -12.69370 -12.54303 -12.35864 -12.08412 -11.94886 -11.70288 -11.57708 -11.35527 -10.95477 -10.80141 -10.46569 -9.59633 -8.11903 -6.31754 1.39592 1.41124 1.53185 2.41453 3.06316 3.68250 3.91696 4.06940 4.19495 4.27489 4.36788 4.41583 4.59112 4.69718 4.83390 4.87866 4.93305 5.01626 5.10472 5.12610 5.15254 5.18961 5.32143 5.35019 5.38511 5.52747 5.63745 5.72424 5.80979 6.26235 6.71250 7.30386 7.45100 8.95535 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.013413 C = 0.010757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.093481 B = 2086.984519 C = 2602.235530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.134 4.134 4 C 0.076 3.924 5 H 0.017 0.983 6 C -0.141 4.141 7 C -0.117 4.117 8 C -0.137 4.137 9 C 0.216 3.784 10 H -0.028 1.028 11 C -0.552 4.552 12 H 0.061 0.939 13 C 0.027 3.973 14 N -0.892 5.892 15 Si 0.958 3.042 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.276 1.276 19 O -0.371 6.371 20 H 0.031 0.969 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 0.114 -7.124 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.191 4.191 4 C 0.018 3.982 5 H 0.035 0.965 6 C -0.178 4.178 7 C -0.154 4.154 8 C -0.175 4.175 9 C 0.160 3.840 10 H -0.011 1.011 11 C -0.589 4.589 12 H 0.079 0.921 13 C -0.176 4.176 14 N -0.529 5.529 15 Si 0.783 3.217 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.202 1.202 19 O -0.291 6.291 20 H 0.050 0.950 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.988 0.249 -7.181 9.353 hybrid contribution -0.638 0.017 0.962 1.155 sum 5.351 0.266 -6.218 8.208 Atomic orbital electron populations 1.21620 0.95842 1.00684 1.00834 1.21122 0.95678 0.97223 0.95861 1.21707 1.01011 0.95404 1.00954 1.22117 0.93363 0.94364 0.88399 0.96531 1.22206 0.95759 1.01680 0.98169 1.21606 1.00653 0.98651 0.94526 1.22103 0.97437 0.99834 0.98084 1.19494 0.89791 0.91560 0.83146 1.01063 1.21451 0.92271 1.36815 1.08370 0.92087 1.25887 0.97691 0.95695 0.98306 1.70186 1.03416 1.43623 1.35651 0.85528 0.78437 0.78481 0.79268 1.18817 1.20659 1.20167 1.88229 1.75201 1.52703 1.12959 0.95008 0.91419 0.94182 0.88566 0.91734 0.91547 0.94977 0.89511 0.91135 0.92977 0.89997 0.92992 0.92431 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.05 71.98 0.65 -4.29 16 2 C -0.08 -2.76 2.81 -10.79 -0.03 -2.79 16 3 C -0.13 -4.29 8.70 71.98 0.63 -3.67 16 4 C 0.08 3.13 2.38 30.62 0.07 3.20 16 5 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 6 C -0.14 -4.68 5.13 30.68 0.16 -4.52 16 7 C -0.12 -4.04 6.03 30.71 0.19 -3.86 16 8 C -0.14 -5.91 5.36 30.69 0.16 -5.75 16 9 C 0.22 11.65 2.50 29.88 0.07 11.73 16 10 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 11 C -0.55 -32.17 8.79 25.60 0.23 -31.95 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 13 C 0.03 1.56 5.40 84.66 0.46 2.02 16 14 N -0.89 -54.20 12.84 21.45 0.28 -53.93 16 15 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 O -0.37 -19.44 8.09 -148.98 -1.21 -20.64 16 20 H 0.03 1.45 7.68 -2.39 -0.02 1.44 16 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 24 H 0.06 1.84 6.38 -2.39 -0.02 1.83 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.25 7.68 -2.39 -0.02 1.23 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.31 6.31 -2.39 -0.02 2.29 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -65.28 261.60 4.73 -60.55 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.05 Total: 6.95 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.58 Total: -39.88 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.28 Total: -53.93 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -1.21 Total: -20.64 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.28 4.73 -60.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.130 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds