Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.53003 * 109.46706 * 119.99716 * 2 1 3 5 5 H 1.09004 * 109.48128 * 300.02014 * 4 2 1 6 6 C 1.53098 * 109.47707 * 179.97438 * 4 2 1 7 7 C 1.53174 * 109.16259 * 182.40727 * 6 4 2 8 8 C 1.53179 * 109.03496 * 56.98021 * 7 6 4 9 9 C 1.53094 * 109.16527 * 303.02089 * 8 7 6 10 10 H 1.09000 * 109.47701 * 297.60906 * 9 8 7 11 11 C 1.50697 * 109.47684 * 177.59175 * 9 8 7 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 9 8 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.42898 * 109.48144 * 60.06238 * 4 2 1 20 20 H 1.08996 * 109.47580 * 300.00292 * 1 2 3 21 21 H 1.09002 * 109.46965 * 60.00523 * 1 2 3 22 22 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47123 * 239.99437 * 2 1 3 24 24 H 1.08997 * 109.47665 * 59.99769 * 3 2 1 25 25 H 1.09001 * 109.46700 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46858 * 299.99542 * 3 2 1 27 27 H 1.08996 * 109.52076 * 62.50250 * 6 4 2 28 28 H 1.09001 * 109.57291 * 302.34504 * 6 4 2 29 29 H 1.09000 * 109.54420 * 297.11418 * 7 6 4 30 30 H 1.08999 * 109.54729 * 176.84797 * 7 6 4 31 31 H 1.09007 * 109.52002 * 183.11039 * 8 7 6 32 32 H 1.08999 * 109.57305 * 62.96269 * 8 7 6 33 33 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6763 -0.2077 2.1394 6 6 3.5709 -0.7219 1.2492 7 6 4.0734 -1.4973 2.4709 8 6 3.4914 -2.9138 2.4376 9 6 1.9635 -2.8285 2.3917 10 1 1.5993 -2.3427 3.2970 11 6 1.3853 -4.2170 2.2991 12 1 2.0411 -5.0748 2.2757 13 6 0.0188 -4.3925 2.2453 14 7 -0.4860 -5.6042 2.1640 15 14 -1.1157 -2.9090 2.2864 16 1 -1.4619 -2.5896 3.6948 17 1 -0.4311 -1.7449 1.6689 18 1 -2.3560 -3.2132 1.5286 19 8 1.5649 -2.0689 1.2489 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9562 -0.8901 27 1 3.9356 0.3043 1.2939 28 1 3.9358 -1.1989 0.3396 29 1 3.7512 -0.9920 3.3814 30 1 5.1619 -1.5497 2.4472 31 1 3.7994 -3.4553 3.3322 32 1 3.8538 -3.4368 1.5526 33 1 -1.4473 -5.7275 2.1257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306517535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = -68.832211 kcal Electronic energy + Delta-G solvation = -13641.638812 eV Core-core repulsion = 11473.585965 eV Total energy + Delta-G solvation = -2168.052846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.78683 -35.00055 -32.82168 -32.34208 -29.66884 -26.98754 -25.64242 -23.67184 -21.59283 -19.62248 -19.42165 -16.73726 -15.71728 -15.25998 -14.21180 -14.04570 -13.59413 -13.50185 -13.02991 -12.49902 -12.43925 -12.08029 -11.93290 -11.51500 -11.01080 -10.92776 -10.55506 -10.50535 -10.44323 -10.18488 -9.84271 -9.66400 -9.42877 -8.98106 -8.48890 -7.99446 -6.05822 -4.14139 3.42432 3.50107 3.71717 4.58893 4.68815 5.11608 5.28508 5.37785 5.46319 5.57051 5.64485 5.77607 5.86510 5.93655 5.96822 6.11873 6.16797 6.19076 6.27258 6.40031 6.42969 6.57684 6.65156 6.71126 6.74323 6.83215 6.84338 7.26111 7.70272 8.48648 8.64383 8.97158 9.58464 11.04094 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.016244 C = 0.011690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.057878 B = 1723.285337 C = 2394.690227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.087 3.913 5 H 0.040 0.960 6 C -0.145 4.145 7 C -0.123 4.123 8 C -0.134 4.134 9 C 0.186 3.814 10 H 0.010 0.990 11 C -0.515 4.515 12 H 0.077 0.923 13 C 0.083 3.917 14 N -0.894 5.894 15 Si 0.857 3.143 16 H -0.291 1.291 17 H -0.201 1.201 18 H -0.295 1.295 19 O -0.370 6.370 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 12.630 -2.286 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.028 3.972 5 H 0.058 0.942 6 C -0.183 4.183 7 C -0.160 4.160 8 C -0.171 4.171 9 C 0.130 3.870 10 H 0.027 0.973 11 C -0.552 4.552 12 H 0.095 0.905 13 C -0.122 4.122 14 N -0.532 5.532 15 Si 0.684 3.316 16 H -0.218 1.218 17 H -0.124 1.124 18 H -0.221 1.221 19 O -0.290 6.290 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.680 12.451 -2.451 13.526 hybrid contribution -0.498 0.594 0.299 0.831 sum 4.182 13.045 -2.152 13.867 Atomic orbital electron populations 1.21940 0.95166 1.03083 1.00116 1.21052 0.96283 0.94864 0.98395 1.21861 1.00904 0.96094 1.01330 1.21862 0.91824 0.87213 0.96254 0.94234 1.22209 0.97580 0.99491 0.99001 1.21646 0.99300 0.97491 0.97604 1.22057 0.98789 0.94634 1.01670 1.20104 0.90184 0.91738 0.84966 0.97256 1.20929 0.92395 0.89756 1.52118 0.90483 1.25062 0.98532 0.96086 0.92473 1.69940 1.12690 1.21690 1.48833 0.87343 0.79549 0.86842 0.77882 1.21767 1.12369 1.22145 1.88394 1.73541 1.19945 1.47163 0.93445 0.93769 0.90784 0.90903 0.92981 0.92573 0.92876 0.92307 0.91699 0.92784 0.92923 0.92172 0.92023 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.16 37.16 0.30 -2.10 16 2 C -0.09 -1.40 2.72 -90.62 -0.25 -1.65 16 3 C -0.14 -1.82 8.84 37.16 0.33 -1.49 16 4 C 0.09 1.61 2.08 -26.68 -0.06 1.56 16 5 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -2.36 4.99 -26.59 -0.13 -2.49 16 7 C -0.12 -2.07 6.03 -26.55 -0.16 -2.23 16 8 C -0.13 -2.76 5.36 -26.59 -0.14 -2.90 16 9 C 0.19 4.50 1.99 -27.84 -0.06 4.45 16 10 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 11 C -0.52 -14.91 9.38 -34.44 -0.32 -15.24 16 12 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 13 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 14 N -0.89 -27.93 13.96 55.43 0.77 -27.15 16 15 Si 0.86 21.60 26.76 -169.99 -4.55 17.05 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.20 -4.64 2.57 56.52 0.15 -4.50 16 18 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 19 O -0.37 -8.58 6.45 -35.23 -0.23 -8.81 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.43 6.00 -51.93 -0.31 1.12 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.65 6.49 -51.93 -0.34 0.32 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -30.54 251.43 -6.64 -37.18 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.84 Total: -2.31 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -0.58 Total: -19.74 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.15 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.23 Total: -8.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.55 Total: 17.05 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.54 -6.64 -37.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.655 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds