Wall clock time and date at job start Mon Mar 30 2020 02:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46954 * 2 1 4 4 C 1.53003 * 109.46706 * 119.99716 * 2 1 3 5 5 H 1.09004 * 109.48128 * 300.02014 * 4 2 1 6 6 C 1.53098 * 109.47707 * 179.97438 * 4 2 1 7 7 C 1.53174 * 109.16259 * 182.40727 * 6 4 2 8 8 C 1.53179 * 109.03496 * 56.98021 * 7 6 4 9 9 C 1.53094 * 109.16527 * 303.02089 * 8 7 6 10 10 H 1.09000 * 109.47701 * 297.60906 * 9 8 7 11 11 C 1.50697 * 109.47684 * 177.59175 * 9 8 7 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 9 8 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.42898 * 109.48144 * 60.06238 * 4 2 1 20 20 H 1.08996 * 109.47580 * 300.00292 * 1 2 3 21 21 H 1.09002 * 109.46965 * 60.00523 * 1 2 3 22 22 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47123 * 239.99437 * 2 1 3 24 24 H 1.08997 * 109.47665 * 59.99769 * 3 2 1 25 25 H 1.09001 * 109.46700 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46858 * 299.99542 * 3 2 1 27 27 H 1.08996 * 109.52076 * 62.50250 * 6 4 2 28 28 H 1.09001 * 109.57291 * 302.34504 * 6 4 2 29 29 H 1.09000 * 109.54420 * 297.11418 * 7 6 4 30 30 H 1.08999 * 109.54729 * 176.84797 * 7 6 4 31 31 H 1.09007 * 109.52002 * 183.11039 * 8 7 6 32 32 H 1.08999 * 109.57305 * 62.96269 * 8 7 6 33 33 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6763 -0.2077 2.1394 6 6 3.5709 -0.7219 1.2492 7 6 4.0734 -1.4973 2.4709 8 6 3.4914 -2.9138 2.4376 9 6 1.9635 -2.8285 2.3917 10 1 1.5993 -2.3427 3.2970 11 6 1.3853 -4.2170 2.2991 12 1 2.0411 -5.0748 2.2757 13 6 0.0188 -4.3925 2.2453 14 7 -0.4860 -5.6042 2.1640 15 14 -1.1157 -2.9090 2.2864 16 1 -1.4619 -2.5896 3.6948 17 1 -0.4311 -1.7449 1.6689 18 1 -2.3560 -3.2132 1.5286 19 8 1.5649 -2.0689 1.2489 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9562 -0.8901 27 1 3.9356 0.3043 1.2939 28 1 3.9358 -1.1989 0.3396 29 1 3.7512 -0.9920 3.3814 30 1 5.1619 -1.5497 2.4472 31 1 3.7994 -3.4553 3.3322 32 1 3.8538 -3.4368 1.5526 33 1 -1.4473 -5.7275 2.1257 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306517535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:11 Heat of formation + Delta-G solvation = -88.019122 kcal Electronic energy + Delta-G solvation = -13642.470819 eV Core-core repulsion = 11473.585965 eV Total energy + Delta-G solvation = -2168.884853 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.35572 -36.43756 -34.58708 -34.26509 -31.37298 -28.27760 -27.32679 -25.17177 -23.33123 -21.01906 -20.92213 -18.92625 -17.28164 -17.00750 -15.93213 -15.51209 -15.04891 -14.96887 -14.82135 -14.16483 -13.97249 -13.35179 -13.18962 -12.98319 -12.84922 -12.40578 -12.15256 -11.94719 -11.91269 -11.70978 -11.55757 -11.34870 -11.08012 -10.82922 -10.62319 -9.70994 -8.34360 -6.47813 1.38411 1.42194 1.71319 2.45923 2.87419 3.48290 3.85798 4.07123 4.12590 4.21801 4.36677 4.38448 4.53310 4.54717 4.72041 4.85143 4.89172 4.93262 5.04149 5.07555 5.09966 5.19357 5.25896 5.28102 5.32352 5.47396 5.55235 5.60119 5.64091 6.23894 6.57052 6.97463 7.30453 8.78985 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.016244 C = 0.011690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.057878 B = 1723.285337 C = 2394.690227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.137 4.137 4 C 0.074 3.926 5 H 0.043 0.957 6 C -0.140 4.140 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.190 3.810 10 H 0.010 0.990 11 C -0.528 4.528 12 H 0.036 0.964 13 C 0.024 3.976 14 N -0.944 5.944 15 Si 0.918 3.082 16 H -0.287 1.287 17 H -0.170 1.170 18 H -0.299 1.299 19 O -0.393 6.393 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.040 0.960 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 16.213 -2.583 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.194 4.194 4 C 0.016 3.984 5 H 0.061 0.939 6 C -0.178 4.178 7 C -0.154 4.154 8 C -0.170 4.170 9 C 0.134 3.866 10 H 0.027 0.973 11 C -0.565 4.565 12 H 0.054 0.946 13 C -0.175 4.175 14 N -0.583 5.583 15 Si 0.742 3.258 16 H -0.214 1.214 17 H -0.091 1.091 18 H -0.227 1.227 19 O -0.314 6.314 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.548 16.048 -2.751 17.202 hybrid contribution -0.699 -0.569 0.367 0.973 sum 4.849 15.479 -2.384 16.395 Atomic orbital electron populations 1.21948 0.95700 1.01261 1.01695 1.21102 0.95929 0.96886 0.96674 1.21806 1.01694 0.93312 1.02578 1.22269 0.93716 0.84616 0.97801 0.93897 1.22189 0.95648 1.01504 0.98412 1.21625 1.00807 0.94447 0.98516 1.21977 0.96467 0.97694 1.00908 1.19824 0.92226 0.89333 0.85183 0.97278 1.21257 0.92224 0.91512 1.51532 0.94577 1.26009 1.00364 0.98994 0.92162 1.70080 1.13096 1.24088 1.51056 0.86456 0.77108 0.84270 0.78009 1.21416 1.09085 1.22653 1.88263 1.74381 1.22606 1.46136 0.92864 0.91319 0.94141 0.91656 0.92248 0.91272 0.91191 0.88606 0.92157 0.91673 0.90148 0.92376 0.93530 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.16 71.98 0.59 -3.87 16 2 C -0.09 -2.50 2.72 -10.79 -0.03 -2.53 16 3 C -0.14 -2.75 8.84 71.98 0.64 -2.12 16 4 C 0.07 2.50 2.08 30.63 0.06 2.57 16 5 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.14 -3.99 4.99 30.68 0.15 -3.84 16 7 C -0.12 -3.52 6.03 30.71 0.19 -3.34 16 8 C -0.13 -5.38 5.36 30.69 0.16 -5.21 16 9 C 0.19 9.21 1.99 29.88 0.06 9.27 16 10 H 0.01 0.46 7.57 -2.39 -0.02 0.45 16 11 C -0.53 -31.71 9.38 25.60 0.24 -31.47 16 12 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 13 C 0.02 1.44 5.47 84.65 0.46 1.91 16 14 N -0.94 -61.38 13.96 21.45 0.30 -61.09 16 15 Si 0.92 45.36 26.76 68.60 1.84 47.19 16 16 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.17 -7.48 2.57 99.48 0.26 -7.22 16 18 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 19 O -0.39 -17.77 6.45 -148.98 -0.96 -18.73 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.04 1.47 6.00 -2.39 -0.01 1.46 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.22 6.49 -2.39 -0.02 1.21 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 2.08 6.57 -2.39 -0.02 2.06 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -68.57 251.43 4.30 -64.27 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.60 Total: 6.99 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 2.52 Total: -38.63 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.30 Total: -61.09 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.96 Total: -18.73 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.84 Total: 47.19 kcal Total: -68.57 4.30 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306517535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.749 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds