Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.52999 * 109.46666 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.48249 * 304.99820 * 4 3 2 6 6 C 1.53095 * 109.48552 * 184.96887 * 4 3 2 7 7 C 1.53186 * 109.16108 * 182.40370 * 6 4 3 8 8 C 1.53176 * 109.03702 * 56.98084 * 7 6 4 9 9 C 1.53098 * 109.16241 * 303.01937 * 8 7 6 10 10 H 1.08997 * 109.47875 * 297.62336 * 9 8 7 11 11 C 1.50699 * 109.47643 * 177.59136 * 9 8 7 12 12 H 1.07996 * 120.00149 * 0.05925 * 11 9 8 13 13 C 1.37879 * 119.99558 * 180.02562 * 11 9 8 14 14 N 1.31508 * 120.00139 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99841 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46806 * 90.00336 * 15 13 11 17 17 H 1.48501 * 109.46791 * 209.99962 * 15 13 11 18 18 H 1.48495 * 109.47130 * 330.00134 * 15 13 11 19 19 O 1.42900 * 109.41322 * 57.61138 * 9 8 7 20 20 H 1.09002 * 109.47437 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47509 * 300.00777 * 1 2 3 22 22 H 1.09001 * 109.47096 * 60.00445 * 1 2 3 23 23 H 1.09001 * 109.47273 * 239.99697 * 2 1 3 24 24 H 1.09001 * 109.46652 * 119.99852 * 2 1 3 25 25 H 1.08991 * 109.46810 * 59.99579 * 3 2 1 26 26 H 1.09001 * 109.46791 * 299.99742 * 3 2 1 27 27 H 1.08997 * 109.52552 * 302.30760 * 6 4 3 28 28 H 1.09002 * 109.52029 * 62.49860 * 6 4 3 29 29 H 1.08997 * 109.54303 * 297.11242 * 7 6 4 30 30 H 1.08995 * 109.53837 * 176.84854 * 7 6 4 31 31 H 1.08997 * 109.52465 * 183.11239 * 8 7 6 32 32 H 1.08996 * 109.57271 * 62.95724 * 8 7 6 33 33 H 0.97001 * 120.00469 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9332 0.8531 0.8427 6 6 4.0807 2.8802 0.1257 7 6 5.6114 2.8771 0.0651 8 6 6.0584 2.2129 -1.2407 9 6 5.4713 0.8008 -1.3129 10 1 5.8593 0.2032 -0.4881 11 6 5.8579 0.1622 -2.6220 12 1 6.4626 0.7079 -3.3312 13 6 5.4402 -1.1189 -2.9139 14 7 4.7040 -1.7833 -2.0502 15 14 5.9189 -1.9103 -4.5370 16 1 7.2057 -2.6333 -4.3745 17 1 4.8621 -2.8678 -4.9514 18 1 6.0692 -0.8591 -5.5749 19 8 4.0471 0.8733 -1.2203 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.6851 3.4799 -0.6940 28 1 3.7546 3.3012 1.0768 29 1 6.0087 2.3189 0.9128 30 1 5.9795 3.9025 0.0973 31 1 7.1467 2.1567 -1.2669 32 1 5.7036 2.7988 -2.0885 33 1 4.4098 -2.6845 -2.2557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306535981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -80.796106 kcal Electronic energy + Delta-G solvation = -13337.730401 eV Core-core repulsion = 11169.158761 eV Total energy + Delta-G solvation = -2168.571640 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.22358 -34.41745 -32.73741 -32.13133 -30.21358 -26.89488 -25.04195 -22.53066 -21.24182 -20.17728 -19.15414 -16.53205 -15.32716 -14.70104 -14.25454 -13.91133 -13.65831 -13.58040 -12.73562 -12.36158 -12.10947 -11.87372 -11.56767 -10.99267 -10.91881 -10.66175 -10.65049 -10.34914 -10.31115 -10.19138 -9.94918 -9.68878 -9.35769 -8.79819 -8.42426 -7.76341 -5.96448 -4.08156 3.32951 3.39724 3.43431 4.45320 5.04298 5.30756 5.50596 5.61394 5.65149 5.74284 5.78865 5.86516 6.05600 6.13576 6.24887 6.32073 6.37481 6.41918 6.43581 6.56542 6.68303 6.80153 6.90210 6.95099 6.99022 7.01996 7.19605 7.58329 7.94525 8.35130 8.84947 9.22868 9.61805 11.11052 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.013513 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.246857 B = 2071.594418 C = 2933.755625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.103 4.103 4 C 0.083 3.917 5 H 0.037 0.963 6 C -0.146 4.146 7 C -0.120 4.120 8 C -0.144 4.144 9 C 0.219 3.781 10 H 0.011 0.989 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.859 5.859 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.273 1.273 19 O -0.350 6.350 20 H 0.047 0.953 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 5.278 4.481 7.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.140 4.140 4 C 0.024 3.976 5 H 0.055 0.945 6 C -0.184 4.184 7 C -0.158 4.158 8 C -0.182 4.182 9 C 0.164 3.836 10 H 0.029 0.971 11 C -0.564 4.564 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.495 5.495 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 O -0.269 6.269 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.943 5.045 4.370 7.752 hybrid contribution 0.398 -0.304 -0.586 0.771 sum -3.545 4.741 3.784 7.026 Atomic orbital electron populations 1.21783 0.97233 1.00812 1.00729 1.21437 0.93920 0.96988 1.03471 1.21514 0.94619 0.97168 1.00721 1.21827 0.93337 0.91488 0.90939 0.94460 1.22199 0.96352 0.99174 1.00635 1.21608 0.95597 0.99476 0.99109 1.22256 1.00034 1.00276 0.95613 1.19653 0.78225 0.88740 0.97001 0.97107 1.21004 1.33049 0.98626 1.03721 0.91966 1.25050 0.94056 0.97080 0.96537 1.70036 1.33706 1.11152 1.34611 0.86650 0.78079 0.79252 0.84286 1.20635 1.21122 1.19798 1.88331 1.24309 1.80749 1.33547 0.93339 0.93740 0.93208 0.89708 0.92874 0.92671 0.92076 0.92026 0.92922 0.92831 0.93371 0.92673 0.92615 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.22 5.83 -26.73 -0.16 -2.38 16 3 C -0.10 -1.85 4.92 -26.73 -0.13 -1.98 16 4 C 0.08 1.74 2.64 -26.68 -0.07 1.67 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.15 -2.64 5.42 -26.59 -0.14 -2.78 16 7 C -0.12 -2.22 6.03 -26.54 -0.16 -2.38 16 8 C -0.14 -3.15 5.36 -26.59 -0.14 -3.29 16 9 C 0.22 5.78 2.50 -27.83 -0.07 5.71 16 10 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 11 C -0.53 -15.04 8.79 -34.44 -0.30 -15.34 16 12 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 13 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 14 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 O -0.35 -9.11 8.97 -35.23 -0.32 -9.43 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.08 1.89 7.82 -51.93 -0.41 1.49 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 267.34 15.07 4.03 4.03 Total: -1.00 -29.55 267.34 -7.37 -36.92 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.87 Total: -2.99 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.90 Total: -20.46 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.71 Total: -24.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.32 Total: -9.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.55 -7.37 -36.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.881 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds