Wall clock time and date at job start Mon Mar 30 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47083 * 2 1 4 4 C 1.52999 * 109.46666 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.48249 * 304.99820 * 4 3 2 6 6 C 1.53095 * 109.48552 * 184.96887 * 4 3 2 7 7 C 1.53186 * 109.16108 * 182.40370 * 6 4 3 8 8 C 1.53176 * 109.03702 * 56.98084 * 7 6 4 9 9 C 1.53098 * 109.16241 * 303.01937 * 8 7 6 10 10 H 1.08997 * 109.47875 * 297.62336 * 9 8 7 11 11 C 1.50699 * 109.47643 * 177.59136 * 9 8 7 12 12 H 1.07996 * 120.00149 * 0.05925 * 11 9 8 13 13 C 1.37879 * 119.99558 * 180.02562 * 11 9 8 14 14 N 1.31508 * 120.00139 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99841 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46806 * 90.00336 * 15 13 11 17 17 H 1.48501 * 109.46791 * 209.99962 * 15 13 11 18 18 H 1.48495 * 109.47130 * 330.00134 * 15 13 11 19 19 O 1.42900 * 109.41322 * 57.61138 * 9 8 7 20 20 H 1.09002 * 109.47437 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47509 * 300.00777 * 1 2 3 22 22 H 1.09001 * 109.47096 * 60.00445 * 1 2 3 23 23 H 1.09001 * 109.47273 * 239.99697 * 2 1 3 24 24 H 1.09001 * 109.46652 * 119.99852 * 2 1 3 25 25 H 1.08991 * 109.46810 * 59.99579 * 3 2 1 26 26 H 1.09001 * 109.46791 * 299.99742 * 3 2 1 27 27 H 1.08997 * 109.52552 * 302.30760 * 6 4 3 28 28 H 1.09002 * 109.52029 * 62.49860 * 6 4 3 29 29 H 1.08997 * 109.54303 * 297.11242 * 7 6 4 30 30 H 1.08995 * 109.53837 * 176.84854 * 7 6 4 31 31 H 1.08997 * 109.52465 * 183.11239 * 8 7 6 32 32 H 1.08996 * 109.57271 * 62.95724 * 8 7 6 33 33 H 0.97001 * 120.00469 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9332 0.8531 0.8427 6 6 4.0807 2.8802 0.1257 7 6 5.6114 2.8771 0.0651 8 6 6.0584 2.2129 -1.2407 9 6 5.4713 0.8008 -1.3129 10 1 5.8593 0.2032 -0.4881 11 6 5.8579 0.1622 -2.6220 12 1 6.4626 0.7079 -3.3312 13 6 5.4402 -1.1189 -2.9139 14 7 4.7040 -1.7833 -2.0502 15 14 5.9189 -1.9103 -4.5370 16 1 7.2057 -2.6333 -4.3745 17 1 4.8621 -2.8678 -4.9514 18 1 6.0692 -0.8591 -5.5749 19 8 4.0471 0.8733 -1.2203 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.6851 3.4799 -0.6940 28 1 3.7546 3.3012 1.0768 29 1 6.0087 2.3189 0.9128 30 1 5.9795 3.9025 0.0973 31 1 7.1467 2.1567 -1.2669 32 1 5.7036 2.7988 -2.0885 33 1 4.4098 -2.6845 -2.2557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306535981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:12 Heat of formation + Delta-G solvation = -98.083658 kcal Electronic energy + Delta-G solvation = -13338.480045 eV Core-core repulsion = 11169.158761 eV Total energy + Delta-G solvation = -2169.321284 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97606 -36.00983 -34.64718 -33.96212 -31.93452 -28.62540 -26.81268 -24.24492 -22.97851 -21.70217 -20.83231 -18.65909 -17.03965 -16.69954 -16.03616 -15.46328 -15.24957 -15.08858 -14.60487 -14.08617 -13.56290 -13.47748 -12.93934 -12.83735 -12.76334 -12.46423 -12.27332 -12.04356 -11.94800 -11.75691 -11.53947 -11.42912 -11.05204 -10.83326 -10.48616 -9.63522 -8.12860 -6.33275 1.39746 1.41519 1.52150 2.40947 3.05034 3.66544 3.87361 4.13685 4.17981 4.25066 4.34038 4.42159 4.53755 4.58536 4.79000 4.86681 4.90999 4.94208 5.03099 5.08595 5.13446 5.22359 5.30664 5.32176 5.40395 5.45568 5.60756 5.64423 5.79614 6.24143 6.69477 7.27860 7.43475 8.94534 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.013513 C = 0.009542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.246857 B = 2071.594418 C = 2933.755625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.097 4.097 4 C 0.070 3.930 5 H 0.021 0.979 6 C -0.139 4.139 7 C -0.117 4.117 8 C -0.138 4.138 9 C 0.216 3.784 10 H -0.026 1.026 11 C -0.555 4.555 12 H 0.062 0.938 13 C 0.026 3.974 14 N -0.893 5.893 15 Si 0.960 3.040 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.267 1.267 19 O -0.381 6.381 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 6.717 4.783 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.134 4.134 4 C 0.011 3.989 5 H 0.039 0.961 6 C -0.176 4.176 7 C -0.154 4.154 8 C -0.176 4.176 9 C 0.161 3.839 10 H -0.009 1.009 11 C -0.592 4.592 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.529 5.529 15 Si 0.784 3.216 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.191 1.191 19 O -0.301 6.301 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.539 6.497 4.678 9.203 hybrid contribution 0.579 -0.756 -0.618 1.135 sum -3.961 5.741 4.060 8.070 Atomic orbital electron populations 1.21709 0.94056 1.01723 1.02213 1.21363 0.96710 0.96919 1.00681 1.21532 0.92438 0.97019 1.02397 1.22172 0.95287 0.93016 0.88391 0.96111 1.22147 0.95909 0.96866 1.02711 1.21604 0.96041 1.00973 0.96795 1.22115 1.00039 0.97689 0.97736 1.19503 0.78926 0.90811 0.94710 1.00889 1.21437 1.33559 0.99506 1.04725 0.91977 1.25916 0.93922 0.97650 1.00211 1.70177 1.34764 1.11422 1.36570 0.85556 0.78039 0.78266 0.79726 1.19496 1.20775 1.19094 1.88228 1.23765 1.81932 1.36125 0.92844 0.91022 0.92841 0.94806 0.93430 0.88753 0.92281 0.91771 0.89197 0.92786 0.89882 0.92242 0.93010 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.12 -4.40 5.83 30.60 0.18 -4.22 16 3 C -0.10 -3.35 4.92 30.59 0.15 -3.20 16 4 C 0.07 2.90 2.64 30.63 0.08 2.98 16 5 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.14 -4.67 5.42 30.69 0.17 -4.50 16 7 C -0.12 -4.05 6.03 30.72 0.19 -3.87 16 8 C -0.14 -6.00 5.36 30.69 0.16 -5.84 16 9 C 0.22 11.78 2.50 29.88 0.07 11.85 16 10 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 11 C -0.56 -32.59 8.79 25.60 0.23 -32.37 16 12 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.03 1.50 5.40 84.66 0.46 1.95 16 14 N -0.89 -54.59 12.84 21.45 0.28 -54.31 16 15 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 O -0.38 -20.40 8.97 -148.98 -1.34 -21.74 16 20 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 1.57 7.82 -2.39 -0.02 1.55 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -66.14 267.34 4.40 -61.74 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.04 Total: 7.65 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 2.40 Total: -40.39 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.31 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.34 Total: -21.74 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.14 4.40 -61.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.341 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds