Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47493 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47990 * 55.02075 * 4 3 2 6 6 C 1.53081 * 109.48430 * 175.05572 * 4 3 2 7 7 C 1.53178 * 109.16730 * 177.58992 * 6 4 3 8 8 C 1.53181 * 109.03706 * 303.02353 * 7 6 4 9 9 C 1.53089 * 109.16039 * 56.97697 * 8 7 6 10 10 H 1.08997 * 109.49439 * 62.38248 * 9 8 7 11 11 C 1.50702 * 109.47688 * 182.40779 * 9 8 7 12 12 H 1.08002 * 120.00299 * 359.94694 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.66252 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 O 1.42902 * 109.41973 * 302.39017 * 9 8 7 20 20 H 1.08999 * 109.47441 * 300.00473 * 1 2 3 21 21 H 1.09002 * 109.46782 * 60.00395 * 1 2 3 22 22 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47441 * 239.99527 * 2 1 3 24 24 H 1.09003 * 109.47224 * 119.99901 * 2 1 3 25 25 H 1.09000 * 109.46820 * 59.99709 * 3 2 1 26 26 H 1.08998 * 109.47343 * 299.99550 * 3 2 1 27 27 H 1.09005 * 109.52545 * 297.49798 * 6 4 3 28 28 H 1.09002 * 109.52356 * 57.62444 * 6 4 3 29 29 H 1.09001 * 109.53822 * 62.88858 * 7 6 4 30 30 H 1.08995 * 109.54628 * 183.06313 * 7 6 4 31 31 H 1.08993 * 109.51662 * 297.07267 * 8 7 6 32 32 H 1.08993 * 109.51939 * 176.88023 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9339 0.8533 -0.8412 6 6 4.0806 2.8803 -0.1237 7 6 5.6111 2.8776 -0.0618 8 6 6.0572 2.2132 1.2444 9 6 5.4702 0.8011 1.3158 10 1 5.8590 0.2034 0.4915 11 6 5.8558 0.1623 2.6252 12 1 6.4597 0.7080 3.3351 13 6 5.4327 -1.1166 2.9193 14 7 4.6973 -1.7810 2.0548 15 14 5.9042 -1.9055 4.5455 16 1 5.3746 -1.0861 5.6652 17 1 5.3295 -3.2729 4.6173 18 1 7.3836 -1.9849 4.6468 19 8 4.0461 0.8732 1.2219 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.7553 3.3014 -1.0751 28 1 3.6832 3.4801 0.6950 29 1 6.0093 2.3195 -0.9092 30 1 5.9793 3.9029 -0.0951 31 1 5.7004 2.7993 2.0913 32 1 7.1453 2.1572 1.2714 33 1 4.3999 -2.6809 2.2616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306535983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -80.738859 kcal Electronic energy + Delta-G solvation = -13338.758889 eV Core-core repulsion = 11170.189731 eV Total energy + Delta-G solvation = -2168.569157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.22341 -34.41709 -32.73632 -32.12929 -30.21332 -26.89362 -25.04063 -22.53055 -21.24037 -20.17642 -19.15402 -16.52964 -15.32568 -14.69852 -14.25814 -13.91104 -13.65772 -13.58018 -12.72977 -12.36115 -12.10757 -11.87491 -11.56716 -10.99528 -10.89281 -10.67964 -10.64668 -10.35205 -10.32264 -10.19104 -9.94809 -9.68556 -9.36155 -8.79204 -8.42348 -7.76348 -5.96195 -4.07958 3.34965 3.39203 3.41991 4.45505 5.04238 5.30795 5.50701 5.61430 5.65074 5.74284 5.78941 5.86581 6.05658 6.13594 6.24907 6.32034 6.37557 6.41996 6.43640 6.56569 6.68347 6.80189 6.90174 6.95171 6.99089 7.02002 7.19681 7.58304 7.94632 8.35225 8.84775 9.22900 9.61905 11.11281 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.013530 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.094431 B = 2068.935572 C = 2931.664430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.103 4.103 4 C 0.083 3.917 5 H 0.037 0.963 6 C -0.146 4.146 7 C -0.120 4.120 8 C -0.144 4.144 9 C 0.220 3.780 10 H 0.011 0.989 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.079 3.921 14 N -0.859 5.859 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.350 6.350 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 5.262 -4.484 7.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.140 4.140 4 C 0.024 3.976 5 H 0.055 0.945 6 C -0.184 4.184 7 C -0.158 4.158 8 C -0.182 4.182 9 C 0.164 3.836 10 H 0.029 0.971 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.495 5.495 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 O -0.269 6.269 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.941 5.023 -4.377 7.741 hybrid contribution 0.388 -0.286 0.600 0.770 sum -3.553 4.737 -3.777 7.024 Atomic orbital electron populations 1.21782 0.97234 1.00812 1.00728 1.21435 0.93919 0.96987 1.03476 1.21515 0.94623 0.97171 1.00717 1.21824 0.93342 0.91485 0.90939 0.94462 1.22195 0.96352 0.99171 1.00638 1.21607 0.95592 0.99478 0.99114 1.22253 1.00037 1.00267 0.95606 1.19647 0.78221 0.88732 0.96992 0.97103 1.20976 1.33089 0.98768 1.03647 0.92021 1.25049 0.94054 0.97056 0.96541 1.70031 1.33624 1.11291 1.34551 0.86713 0.78710 0.78381 0.84443 1.20124 1.21226 1.20200 1.88332 1.24328 1.80732 1.33541 0.93206 0.93743 0.93339 0.92875 0.89702 0.92083 0.92669 0.92931 0.92031 0.92842 0.93373 0.92619 0.92662 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.22 5.83 -26.73 -0.16 -2.38 16 3 C -0.10 -1.85 4.92 -26.73 -0.13 -1.99 16 4 C 0.08 1.74 2.64 -26.69 -0.07 1.67 16 5 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 6 C -0.15 -2.64 5.42 -26.60 -0.14 -2.78 16 7 C -0.12 -2.22 6.03 -26.55 -0.16 -2.38 16 8 C -0.14 -3.15 5.36 -26.59 -0.14 -3.29 16 9 C 0.22 5.79 2.50 -27.84 -0.07 5.72 16 10 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 11 C -0.53 -15.07 8.80 -34.44 -0.30 -15.37 16 12 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 13 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 14 N -0.86 -25.32 12.83 55.43 0.71 -24.61 16 15 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 O -0.35 -9.11 8.96 -35.23 -0.32 -9.43 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.08 1.89 7.82 -51.93 -0.41 1.49 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -29.52 267.32 -7.37 -36.89 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.87 Total: -2.96 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.91 Total: -20.47 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.71 Total: -24.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.32 Total: -9.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.52 -7.37 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.849 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds