Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47493 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47990 * 55.02075 * 4 3 2 6 6 C 1.53081 * 109.48430 * 175.05572 * 4 3 2 7 7 C 1.53178 * 109.16730 * 177.58992 * 6 4 3 8 8 C 1.53181 * 109.03706 * 303.02353 * 7 6 4 9 9 C 1.53089 * 109.16039 * 56.97697 * 8 7 6 10 10 H 1.08997 * 109.49439 * 62.38248 * 9 8 7 11 11 C 1.50702 * 109.47688 * 182.40779 * 9 8 7 12 12 H 1.08002 * 120.00299 * 359.94694 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.66252 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 O 1.42902 * 109.41973 * 302.39017 * 9 8 7 20 20 H 1.08999 * 109.47441 * 300.00473 * 1 2 3 21 21 H 1.09002 * 109.46782 * 60.00395 * 1 2 3 22 22 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47441 * 239.99527 * 2 1 3 24 24 H 1.09003 * 109.47224 * 119.99901 * 2 1 3 25 25 H 1.09000 * 109.46820 * 59.99709 * 3 2 1 26 26 H 1.08998 * 109.47343 * 299.99550 * 3 2 1 27 27 H 1.09005 * 109.52545 * 297.49798 * 6 4 3 28 28 H 1.09002 * 109.52356 * 57.62444 * 6 4 3 29 29 H 1.09001 * 109.53822 * 62.88858 * 7 6 4 30 30 H 1.08995 * 109.54628 * 183.06313 * 7 6 4 31 31 H 1.08993 * 109.51662 * 297.07267 * 8 7 6 32 32 H 1.08993 * 109.51939 * 176.88023 * 8 7 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9339 0.8533 -0.8412 6 6 4.0806 2.8803 -0.1237 7 6 5.6111 2.8776 -0.0618 8 6 6.0572 2.2132 1.2444 9 6 5.4702 0.8011 1.3158 10 1 5.8590 0.2034 0.4915 11 6 5.8558 0.1623 2.6252 12 1 6.4597 0.7080 3.3351 13 6 5.4327 -1.1166 2.9193 14 7 4.6973 -1.7810 2.0548 15 14 5.9042 -1.9055 4.5455 16 1 5.3746 -1.0861 5.6652 17 1 5.3295 -3.2729 4.6173 18 1 7.3836 -1.9849 4.6468 19 8 4.0461 0.8732 1.2219 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 3.7553 3.3014 -1.0751 28 1 3.6832 3.4801 0.6950 29 1 6.0093 2.3195 -0.9092 30 1 5.9793 3.9029 -0.0951 31 1 5.7004 2.7993 2.0913 32 1 7.1453 2.1572 1.2714 33 1 4.3999 -2.6809 2.2616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306535983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -98.000800 kcal Electronic energy + Delta-G solvation = -13339.507423 eV Core-core repulsion = 11170.189731 eV Total energy + Delta-G solvation = -2169.317691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.97606 -36.00931 -34.64545 -33.96082 -31.93441 -28.62374 -26.81149 -24.24466 -22.97736 -21.70167 -20.83238 -18.65553 -17.03837 -16.69782 -16.03880 -15.46329 -15.24901 -15.08717 -14.59849 -14.08552 -13.56247 -13.47883 -12.94188 -12.82569 -12.74782 -12.48551 -12.27387 -12.04772 -11.94969 -11.75552 -11.53688 -11.42828 -11.05600 -10.82241 -10.48805 -9.63546 -8.12594 -6.33051 1.40044 1.43184 1.50490 2.41182 3.05086 3.66582 3.87391 4.13601 4.18001 4.25095 4.34039 4.42226 4.53760 4.58565 4.79056 4.86608 4.91015 4.94210 5.03097 5.08666 5.13414 5.22408 5.30629 5.32158 5.40433 5.45557 5.60696 5.64496 5.79677 6.24231 6.69367 7.27839 7.43648 8.94620 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.013530 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.094431 B = 2068.935572 C = 2931.664430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.097 4.097 4 C 0.070 3.930 5 H 0.021 0.979 6 C -0.139 4.139 7 C -0.117 4.117 8 C -0.138 4.138 9 C 0.217 3.783 10 H -0.026 1.026 11 C -0.556 4.556 12 H 0.062 0.938 13 C 0.026 3.974 14 N -0.892 5.892 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.265 1.265 19 O -0.381 6.381 20 H 0.052 0.948 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 6.707 -4.778 9.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.134 4.134 4 C 0.011 3.989 5 H 0.039 0.961 6 C -0.176 4.176 7 C -0.154 4.154 8 C -0.176 4.176 9 C 0.161 3.839 10 H -0.009 1.009 11 C -0.593 4.593 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.529 5.529 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.190 1.190 19 O -0.300 6.300 20 H 0.072 0.928 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.535 6.482 -4.677 9.190 hybrid contribution 0.568 -0.739 0.629 1.124 sum -3.967 5.744 -4.047 8.069 Atomic orbital electron populations 1.21707 0.94057 1.01726 1.02208 1.21361 0.96710 0.96914 1.00689 1.21533 0.92444 0.97026 1.02388 1.22169 0.95294 0.93012 0.88390 0.96113 1.22143 0.95911 0.96865 1.02715 1.21603 0.96034 1.00979 0.96802 1.22112 1.00038 0.97679 0.97735 1.19498 0.78920 0.90806 0.94707 1.00890 1.21421 1.33604 0.99651 1.04662 0.91965 1.25916 0.93909 0.97622 1.00232 1.70176 1.34683 1.11526 1.36513 0.85619 0.78893 0.77362 0.79753 1.19613 1.20698 1.18985 1.88230 1.23784 1.81917 1.36118 0.92843 0.91028 0.92838 0.93429 0.94793 0.92298 0.88752 0.89208 0.91776 0.92799 0.89880 0.93001 0.92234 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.12 -4.40 5.83 30.59 0.18 -4.22 16 3 C -0.10 -3.35 4.92 30.59 0.15 -3.20 16 4 C 0.07 2.90 2.64 30.62 0.08 2.98 16 5 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 6 C -0.14 -4.67 5.42 30.68 0.17 -4.50 16 7 C -0.12 -4.05 6.03 30.71 0.19 -3.87 16 8 C -0.14 -6.00 5.36 30.68 0.16 -5.83 16 9 C 0.22 11.79 2.50 29.88 0.07 11.87 16 10 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 11 C -0.56 -32.65 8.80 25.60 0.23 -32.43 16 12 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.03 1.51 5.40 84.66 0.46 1.97 16 14 N -0.89 -54.58 12.83 21.45 0.28 -54.31 16 15 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 O -0.38 -20.40 8.96 -148.98 -1.33 -21.74 16 20 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.03 1.58 7.82 -2.39 -0.02 1.56 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -66.09 267.32 4.40 -61.69 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.40 Total: -40.42 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.28 Total: -54.31 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.33 Total: -21.74 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.09 4.40 -61.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.311 kcal (2) G-P(sol) polarization free energy of solvation -66.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds