Wall clock time and date at job start Mon Mar 30 2020 02:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47339 * 54.97773 * 4 3 2 6 6 C 1.53084 * 109.47951 * 175.00208 * 4 3 2 7 7 C 1.53181 * 109.16403 * 177.59749 * 6 4 3 8 8 C 1.53185 * 109.03191 * 303.01722 * 7 6 4 9 9 C 1.53094 * 109.16184 * 56.97855 * 8 7 6 10 10 H 1.08998 * 109.47776 * 182.39441 * 9 8 7 11 11 C 1.50701 * 109.47710 * 62.37527 * 9 8 7 12 12 H 1.07998 * 120.00282 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99487 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00514 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99720 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46699 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46814 * 120.00013 * 15 13 11 18 18 H 1.48496 * 109.47232 * 240.00495 * 15 13 11 19 19 O 1.42896 * 109.41680 * 302.39186 * 9 8 7 20 20 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 21 21 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 23 23 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 24 24 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 25 25 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 26 26 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 27 27 H 1.09004 * 109.52349 * 297.49703 * 6 4 3 28 28 H 1.08997 * 109.52542 * 57.62656 * 6 4 3 29 29 H 1.08991 * 109.54714 * 62.88162 * 7 6 4 30 30 H 1.09003 * 109.54667 * 183.15306 * 7 6 4 31 31 H 1.08998 * 109.52289 * 176.88906 * 8 7 6 32 32 H 1.08998 * 109.52232 * 297.01411 * 8 7 6 33 33 H 0.96999 * 120.00130 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9331 0.8528 -0.8425 6 6 4.0805 2.8802 -0.1264 7 6 5.6111 2.8775 -0.0659 8 6 6.0582 2.2140 1.2404 9 6 5.4713 0.8019 1.3133 10 1 5.7511 0.3405 2.2603 11 6 6.0079 -0.0248 0.1734 12 1 6.6981 0.4126 -0.5328 13 6 5.6178 -1.3397 0.0321 14 7 4.7770 -1.8723 0.8918 15 14 6.2825 -2.3644 -1.3814 16 1 7.2041 -1.5377 -2.2014 17 1 7.0176 -3.5359 -0.8405 18 1 5.1546 -2.8342 -2.2253 19 8 4.0471 0.8741 1.2206 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6766 1.9562 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.7543 3.3007 -1.0777 28 1 3.6837 3.4805 0.6923 29 1 6.0085 2.3189 -0.9132 30 1 5.9792 3.9030 -0.0986 31 1 7.1464 2.1580 1.2666 32 1 5.7032 2.8012 2.0873 33 1 4.5023 -2.7972 0.7921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306535985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:16 Heat of formation + Delta-G solvation = -79.347108 kcal Electronic energy + Delta-G solvation = -13615.624928 eV Core-core repulsion = 11447.116121 eV Total energy + Delta-G solvation = -2168.508807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.22399 -34.31378 -32.51008 -32.04049 -30.14576 -26.67178 -25.05551 -22.57325 -21.37127 -20.05683 -18.88805 -16.35367 -14.89498 -14.86824 -14.40881 -13.66431 -13.50991 -13.44892 -12.77243 -12.19522 -11.98020 -11.71518 -11.51721 -11.11818 -10.92047 -10.68198 -10.57542 -10.32354 -10.20796 -10.08180 -9.87272 -9.52162 -9.36846 -8.59992 -8.38388 -7.65779 -5.94146 -4.08248 3.28755 3.37690 3.40761 4.43687 5.18416 5.44314 5.51208 5.71401 5.77927 5.88096 5.92868 5.97833 6.18792 6.26857 6.40227 6.43574 6.47000 6.53172 6.59718 6.66716 6.83405 6.90640 7.04865 7.09806 7.14332 7.26423 7.36133 7.77025 7.93083 8.28659 8.89467 9.18901 9.63451 11.10017 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.017145 C = 0.011799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.632135 B = 1632.696518 C = 2372.438715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.105 4.105 4 C 0.104 3.896 5 H 0.060 0.940 6 C -0.143 4.143 7 C -0.108 4.108 8 C -0.142 4.142 9 C 0.212 3.788 10 H 0.058 0.942 11 C -0.555 4.555 12 H 0.055 0.945 13 C 0.081 3.919 14 N -0.857 5.857 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.368 6.368 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 5.471 -2.198 7.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.143 4.143 4 C 0.045 3.955 5 H 0.078 0.922 6 C -0.181 4.181 7 C -0.146 4.146 8 C -0.180 4.180 9 C 0.156 3.844 10 H 0.076 0.924 11 C -0.593 4.593 12 H 0.073 0.927 13 C -0.125 4.125 14 N -0.493 5.493 15 Si 0.706 3.294 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.287 6.287 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.129 5.247 -1.988 6.967 hybrid contribution 0.600 -0.521 -1.054 1.320 sum -3.529 4.726 -3.042 6.637 Atomic orbital electron populations 1.21802 0.97535 1.00665 1.00611 1.21387 0.93419 0.97049 1.03559 1.21555 0.95421 0.96948 1.00330 1.21557 0.91649 0.90941 0.91311 0.92189 1.22166 0.96628 0.99289 1.00052 1.21432 0.95370 0.98283 0.99511 1.22179 0.99963 0.99956 0.95865 1.19672 0.78464 0.88812 0.97492 0.92447 1.21566 1.28537 0.96301 1.12870 0.92650 1.24992 0.94337 0.97585 0.95588 1.70063 1.31119 1.13246 1.34871 0.86769 0.78985 0.80582 0.83040 1.19810 1.20978 1.20961 1.87886 1.23800 1.81732 1.35281 0.93773 0.93466 0.93360 0.92748 0.90006 0.92650 0.92764 0.93137 0.92962 0.91456 0.94381 0.92795 0.94215 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.12 -2.25 5.83 -26.73 -0.16 -2.41 16 3 C -0.11 -1.98 4.92 -26.73 -0.13 -2.11 16 4 C 0.10 2.29 2.37 -26.68 -0.06 2.23 16 5 H 0.06 1.48 7.09 -51.93 -0.37 1.11 16 6 C -0.14 -2.75 5.42 -26.59 -0.14 -2.90 16 7 C -0.11 -2.14 5.78 -26.54 -0.15 -2.29 16 8 C -0.14 -3.05 5.59 -26.59 -0.15 -3.20 16 9 C 0.21 5.42 3.16 -27.83 -0.09 5.33 16 10 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 11 C -0.55 -15.04 6.59 -34.44 -0.23 -15.26 16 12 H 0.06 1.49 6.87 -52.49 -0.36 1.13 16 13 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 14 N -0.86 -24.56 12.84 55.43 0.71 -23.85 16 15 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 O -0.37 -9.39 9.18 -35.23 -0.32 -9.71 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.08 1.85 7.83 -51.93 -0.41 1.44 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.41 6.85 -51.93 -0.36 1.06 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -28.22 262.50 -7.22 -35.43 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.70 Total: -1.51 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -0.84 Total: -20.42 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.71 Total: -23.85 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.32 Total: -9.71 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.22 -7.22 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.917 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds