Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47339 * 54.97773 * 4 3 2 6 6 C 1.53084 * 109.47951 * 175.00208 * 4 3 2 7 7 C 1.53181 * 109.16403 * 177.59749 * 6 4 3 8 8 C 1.53185 * 109.03191 * 303.01722 * 7 6 4 9 9 C 1.53094 * 109.16184 * 56.97855 * 8 7 6 10 10 H 1.08998 * 109.47776 * 182.39441 * 9 8 7 11 11 C 1.50701 * 109.47710 * 62.37527 * 9 8 7 12 12 H 1.07998 * 120.00282 * 359.97438 * 11 9 8 13 13 C 1.37882 * 119.99487 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00514 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99720 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46699 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46814 * 120.00013 * 15 13 11 18 18 H 1.48496 * 109.47232 * 240.00495 * 15 13 11 19 19 O 1.42896 * 109.41680 * 302.39186 * 9 8 7 20 20 H 1.08992 * 109.47534 * 59.99520 * 1 2 3 21 21 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46997 * 299.99574 * 1 2 3 23 23 H 1.09001 * 109.46993 * 239.99869 * 2 1 3 24 24 H 1.09004 * 109.47298 * 120.00283 * 2 1 3 25 25 H 1.09001 * 109.46832 * 60.00325 * 3 2 1 26 26 H 1.08993 * 109.47194 * 299.99846 * 3 2 1 27 27 H 1.09004 * 109.52349 * 297.49703 * 6 4 3 28 28 H 1.08997 * 109.52542 * 57.62656 * 6 4 3 29 29 H 1.08991 * 109.54714 * 62.88162 * 7 6 4 30 30 H 1.09003 * 109.54667 * 183.15306 * 7 6 4 31 31 H 1.08998 * 109.52289 * 176.88906 * 8 7 6 32 32 H 1.08998 * 109.52232 * 297.01411 * 8 7 6 33 33 H 0.96999 * 120.00130 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9331 0.8528 -0.8425 6 6 4.0805 2.8802 -0.1264 7 6 5.6111 2.8775 -0.0659 8 6 6.0582 2.2140 1.2404 9 6 5.4713 0.8019 1.3133 10 1 5.7511 0.3405 2.2603 11 6 6.0079 -0.0248 0.1734 12 1 6.6981 0.4126 -0.5328 13 6 5.6178 -1.3397 0.0321 14 7 4.7770 -1.8723 0.8918 15 14 6.2825 -2.3644 -1.3814 16 1 7.2041 -1.5377 -2.2014 17 1 7.0176 -3.5359 -0.8405 18 1 5.1546 -2.8342 -2.2253 19 8 4.0471 0.8741 1.2206 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6766 1.9562 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.7543 3.3007 -1.0777 28 1 3.6837 3.4805 0.6923 29 1 6.0085 2.3189 -0.9132 30 1 5.9792 3.9030 -0.0986 31 1 7.1464 2.1580 1.2666 32 1 5.7032 2.8012 2.0873 33 1 4.5023 -2.7972 0.7921 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306535985.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -95.318658 kcal Electronic energy + Delta-G solvation = -13616.317506 eV Core-core repulsion = 11447.116121 eV Total energy + Delta-G solvation = -2169.201385 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01427 -35.91152 -34.43961 -33.89317 -31.84299 -28.41392 -26.87274 -24.31158 -23.06421 -21.63462 -20.68845 -18.35486 -16.80430 -16.59186 -16.27039 -15.28871 -15.22284 -15.07102 -14.57941 -13.80475 -13.50993 -13.48476 -12.98130 -12.86853 -12.80925 -12.48630 -12.30321 -12.00172 -11.87363 -11.69427 -11.44583 -11.31124 -11.09890 -10.63212 -10.36194 -9.53358 -8.05579 -6.25774 1.36153 1.38980 1.48924 2.40956 3.16227 3.65451 3.96466 4.21822 4.27236 4.32640 4.41348 4.48735 4.65023 4.77355 4.86176 4.92931 4.98074 5.00204 5.06233 5.15092 5.27247 5.28674 5.42269 5.45065 5.48149 5.61579 5.69533 5.73376 5.87150 6.21112 6.80400 7.24244 7.51261 8.98370 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.024435 B = 0.017145 C = 0.011799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.632135 B = 1632.696518 C = 2372.438715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.100 4.100 4 C 0.097 3.903 5 H 0.026 0.974 6 C -0.138 4.138 7 C -0.106 4.106 8 C -0.136 4.136 9 C 0.205 3.795 10 H 0.020 0.980 11 C -0.560 4.560 12 H 0.053 0.947 13 C 0.033 3.967 14 N -0.889 5.889 15 Si 0.940 3.060 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.282 1.282 19 O -0.391 6.391 20 H 0.067 0.933 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 7.027 -3.439 9.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.137 4.137 4 C 0.038 3.962 5 H 0.044 0.956 6 C -0.176 4.176 7 C -0.144 4.144 8 C -0.174 4.174 9 C 0.149 3.851 10 H 0.038 0.962 11 C -0.598 4.598 12 H 0.072 0.928 13 C -0.170 4.170 14 N -0.527 5.527 15 Si 0.766 3.234 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.208 1.208 19 O -0.311 6.311 20 H 0.086 0.914 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.745 6.814 -3.234 8.911 hybrid contribution 0.792 -0.999 -0.639 1.426 sum -3.953 5.815 -3.873 8.028 Atomic orbital electron populations 1.21718 0.94090 1.01615 1.02262 1.21294 0.96422 0.96951 1.00447 1.21570 0.93132 0.96796 1.02208 1.21762 0.93669 0.92158 0.88581 0.95644 1.22118 0.96106 0.97215 1.02117 1.21424 0.95906 0.99683 0.97368 1.22065 0.99978 0.97613 0.97757 1.19569 0.79171 0.91108 0.95251 0.96185 1.21790 1.28209 0.96759 1.13061 0.92843 1.25703 0.94628 0.98797 0.97848 1.70193 1.32450 1.13436 1.36595 0.85804 0.78390 0.79048 0.80204 1.19039 1.20587 1.20788 1.87820 1.23443 1.82722 1.37093 0.91439 0.93001 0.92278 0.94692 0.94351 0.91808 0.89495 0.90237 0.91680 0.93159 0.90888 0.92422 0.92965 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.11 -4.37 5.83 30.59 0.18 -4.20 16 3 C -0.10 -3.60 4.92 30.60 0.15 -3.45 16 4 C 0.10 4.19 2.37 30.62 0.07 4.26 16 5 H 0.03 1.27 7.09 -2.38 -0.02 1.26 16 6 C -0.14 -4.91 5.42 30.68 0.17 -4.74 16 7 C -0.11 -3.95 5.78 30.72 0.18 -3.77 16 8 C -0.14 -5.76 5.59 30.69 0.17 -5.59 16 9 C 0.21 10.78 3.16 29.88 0.09 10.87 16 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 11 C -0.56 -30.96 6.59 25.60 0.17 -30.79 16 12 H 0.05 2.91 6.87 -2.91 -0.02 2.89 16 13 C 0.03 1.84 5.40 84.66 0.46 2.30 16 14 N -0.89 -52.77 12.84 21.45 0.28 -52.49 16 15 Si 0.94 44.01 29.54 68.60 2.03 46.04 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 O -0.39 -20.36 9.18 -148.98 -1.37 -21.73 16 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.79 7.83 -2.38 -0.02 1.77 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 2.03 6.85 -2.39 -0.02 2.01 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -62.08 262.50 4.33 -57.75 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.05 Total: 8.84 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 2.35 Total: -38.41 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.28 Total: -52.49 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.37 Total: -21.73 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -62.08 4.33 -57.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535985.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.569 kcal (2) G-P(sol) polarization free energy of solvation -62.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds