Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47196 * 2 1 4 4 C 1.52998 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47950 * 304.98229 * 4 3 2 6 6 C 1.53090 * 109.49113 * 184.94775 * 4 3 2 7 7 C 1.53172 * 109.16341 * 182.40304 * 6 4 3 8 8 C 1.53177 * 109.03714 * 56.98653 * 7 6 4 9 9 C 1.53097 * 109.16069 * 303.01472 * 8 7 6 10 10 H 1.09000 * 109.48920 * 177.59772 * 9 8 7 11 11 C 1.50701 * 109.48202 * 297.63119 * 9 8 7 12 12 H 1.08002 * 119.99761 * 359.93411 * 11 9 8 13 13 C 1.37871 * 119.99694 * 180.21974 * 11 9 8 14 14 N 1.31523 * 119.99908 * 179.72112 * 13 11 9 15 15 Si 1.86800 * 120.00405 * 359.71709 * 13 11 9 16 16 H 1.48500 * 109.47210 * 90.00069 * 15 13 11 17 17 H 1.48504 * 109.47424 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.46888 * 330.00390 * 15 13 11 19 19 O 1.42904 * 109.47953 * 65.00196 * 4 3 2 20 20 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47064 * 299.99920 * 1 2 3 22 22 H 1.09002 * 109.47461 * 59.99911 * 1 2 3 23 23 H 1.09005 * 109.47047 * 240.00637 * 2 1 3 24 24 H 1.08996 * 109.47211 * 120.00464 * 2 1 3 25 25 H 1.09005 * 109.47049 * 60.00071 * 3 2 1 26 26 H 1.09002 * 109.46988 * 300.00378 * 3 2 1 27 27 H 1.09005 * 109.52441 * 302.31404 * 6 4 3 28 28 H 1.09000 * 109.52106 * 62.50105 * 6 4 3 29 29 H 1.09004 * 109.54447 * 176.84703 * 7 6 4 30 30 H 1.08999 * 109.54861 * 297.11122 * 7 6 4 31 31 H 1.08997 * 109.52463 * 183.11654 * 8 7 6 32 32 H 1.08996 * 109.52544 * 62.91902 * 8 7 6 33 33 H 0.96995 * 120.00181 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9331 0.8535 0.8428 6 6 4.0807 2.8803 0.1251 7 6 5.6112 2.8772 0.0646 8 6 6.0583 2.2126 -1.2411 9 6 5.4712 0.8005 -1.3128 10 1 5.7509 0.3381 -2.2594 11 6 6.0077 -0.0254 -0.1721 12 1 6.6989 0.4122 0.5330 13 6 5.6205 -1.3412 -0.0321 14 7 6.0929 -2.0636 0.9603 15 14 4.4249 -2.0980 -1.2516 16 1 5.1820 -2.7001 -2.3784 17 1 3.6260 -3.1503 -0.5737 18 1 3.5163 -1.0451 -1.7723 19 8 4.0470 0.8730 -1.2201 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.6849 3.4798 -0.6947 28 1 3.7547 3.3016 1.0761 29 1 5.9795 3.9027 0.0964 30 1 6.0086 2.3193 0.9125 31 1 7.1465 2.1563 -1.2672 32 1 5.7025 2.7985 -2.0885 33 1 5.8202 -2.9892 1.0591 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306535987.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = -90.497654 kcal Electronic energy + Delta-G solvation = -13709.293134 eV Core-core repulsion = 11540.300804 eV Total energy + Delta-G solvation = -2168.992330 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.26465 -36.00533 -34.50063 -34.15315 -32.10046 -28.66971 -26.95731 -24.27520 -23.14979 -21.74666 -20.61714 -18.74550 -17.15354 -16.75904 -16.08757 -15.51963 -15.44978 -15.06713 -14.51336 -14.19857 -13.68797 -13.54831 -13.36790 -12.99117 -12.79956 -12.40041 -12.12542 -11.98739 -11.85505 -11.68572 -11.45633 -11.29631 -11.14211 -10.72864 -10.52976 -9.63422 -8.31522 -6.41159 1.35718 1.41103 1.69851 2.43462 3.01802 3.43912 3.89188 4.15417 4.22216 4.26175 4.34668 4.42742 4.57738 4.70575 4.80453 4.88924 4.92328 4.95609 5.00915 5.09069 5.21711 5.26187 5.33220 5.36032 5.42507 5.48404 5.55967 5.64196 5.72960 6.14032 6.67641 6.91589 7.35303 8.82645 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.020968 C = 0.013108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.109458 B = 1335.033284 C = 2135.512934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C -0.100 4.100 4 C 0.088 3.912 5 H 0.027 0.973 6 C -0.134 4.134 7 C -0.111 4.111 8 C -0.129 4.129 9 C 0.172 3.828 10 H 0.055 0.945 11 C -0.537 4.537 12 H 0.036 0.964 13 C 0.031 3.969 14 N -0.943 5.943 15 Si 0.912 3.088 16 H -0.288 1.288 17 H -0.300 1.300 18 H -0.189 1.189 19 O -0.395 6.395 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 8.577 -3.414 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.137 4.137 4 C 0.030 3.970 5 H 0.045 0.955 6 C -0.172 4.172 7 C -0.148 4.148 8 C -0.166 4.166 9 C 0.115 3.885 10 H 0.073 0.927 11 C -0.575 4.575 12 H 0.055 0.945 13 C -0.168 4.168 14 N -0.583 5.583 15 Si 0.737 3.263 16 H -0.215 1.215 17 H -0.227 1.227 18 H -0.110 1.110 19 O -0.315 6.315 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.461 8.385 -3.485 13.114 hybrid contribution 0.468 -1.038 0.201 1.156 sum -8.993 7.347 -3.284 12.068 Atomic orbital electron populations 1.21723 0.93783 1.01814 1.02577 1.21635 0.97218 0.97489 1.00916 1.21590 0.92359 0.96777 1.03007 1.21902 0.94067 0.92863 0.88139 0.95453 1.22060 0.95685 0.96932 1.02481 1.21442 0.96244 0.99746 0.97413 1.21918 1.00038 0.96633 0.98044 1.20035 0.79376 0.93465 0.95597 0.92736 1.21654 1.27312 0.96225 1.12314 0.94527 1.25737 0.96916 0.97594 0.96526 1.70086 1.46114 1.09088 1.33044 0.86466 0.81388 0.78925 0.79498 1.21537 1.22672 1.11039 1.87934 1.23017 1.82118 1.38446 0.92893 0.91564 0.91744 0.93205 0.94380 0.89406 0.90658 0.90612 0.90533 0.90747 0.94276 0.92535 0.91272 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.13 -4.57 5.83 30.59 0.18 -4.39 16 3 C -0.10 -3.18 4.92 30.59 0.15 -3.03 16 4 C 0.09 3.49 2.37 30.62 0.07 3.57 16 5 H 0.03 1.32 7.09 -2.39 -0.02 1.31 16 6 C -0.13 -4.44 5.42 30.68 0.17 -4.28 16 7 C -0.11 -4.03 5.78 30.71 0.18 -3.85 16 8 C -0.13 -5.02 5.59 30.69 0.17 -4.85 16 9 C 0.17 8.06 2.65 29.88 0.08 8.14 16 10 H 0.05 2.58 7.57 -2.39 -0.02 2.56 16 11 C -0.54 -30.43 7.17 25.60 0.18 -30.24 16 12 H 0.04 2.29 7.12 -2.91 -0.02 2.27 16 13 C 0.03 1.83 5.47 84.65 0.46 2.29 16 14 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 15 Si 0.91 45.42 26.33 68.60 1.81 47.23 16 16 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 17 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 18 H -0.19 -8.72 3.84 99.48 0.38 -8.34 16 19 O -0.39 -17.58 6.63 -148.98 -0.99 -18.57 16 20 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 22 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.91 5.55 -2.38 -0.01 1.90 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.66 6.85 -2.39 -0.02 1.65 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -64.89 252.13 4.20 -60.69 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.73 Total: 9.59 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 2.36 Total: -39.50 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.30 Total: -59.44 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.99 Total: -18.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.81 Total: 47.23 kcal Total: -64.89 4.20 -60.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306535987.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.806 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds