Wall clock time and date at job start Mon Mar 30 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47201 * 2 1 4 4 C 1.53000 * 109.47201 * 120.00608 * 2 1 3 5 5 C 1.53001 * 109.46883 * 174.99932 * 4 2 1 6 6 H 1.09011 * 110.27450 * 52.90797 * 5 4 2 7 7 C 1.54946 * 110.30915 * 174.99304 * 5 4 2 8 8 C 1.55313 * 100.94036 * 155.45924 * 7 5 4 9 9 C 1.54379 * 102.25080 * 325.86978 * 8 7 5 10 10 H 1.09000 * 109.83373 * 261.74713 * 9 8 7 11 11 C 1.50702 * 109.82773 * 140.86898 * 9 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.71939 * 11 9 8 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 9 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 9 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 O 1.43230 * 107.59211 * 21.35869 * 9 8 7 20 20 H 1.09003 * 109.47227 * 299.99387 * 1 2 3 21 21 H 1.08992 * 109.47580 * 59.99931 * 1 2 3 22 22 H 1.09009 * 109.46952 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46725 * 240.00511 * 2 1 3 24 24 H 1.09000 * 109.47203 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47182 * 300.00748 * 3 2 1 26 26 H 1.09003 * 109.46529 * 60.00186 * 3 2 1 27 27 H 1.08990 * 109.47208 * 55.00131 * 4 2 1 28 28 H 1.08998 * 109.46498 * 294.99261 * 4 2 1 29 29 H 1.09001 * 111.12337 * 37.54364 * 7 5 4 30 30 H 1.08999 * 111.16321 * 273.39195 * 7 5 4 31 31 H 1.08999 * 110.84934 * 207.67980 * 8 7 5 32 32 H 1.08996 * 111.01935 * 84.13660 * 8 7 5 33 33 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8311 1.1878 6 1 4.0076 0.1500 1.0157 7 6 4.1131 -1.4457 2.5003 8 6 5.4580 -2.0448 2.0060 9 6 5.1102 -2.4893 0.5691 10 1 4.8868 -3.5561 0.5558 11 6 6.2682 -2.1982 -0.3505 12 1 7.1664 -1.7429 0.0397 13 6 6.1833 -2.5190 -1.6888 14 7 7.1959 -2.2700 -2.4902 15 14 4.6299 -3.3072 -2.3636 16 1 3.6921 -2.2472 -2.8131 17 1 4.9774 -4.1808 -3.5131 18 1 3.9856 -4.1202 -1.3010 19 8 3.9597 -1.7449 0.1522 20 1 -0.3634 0.5137 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.6055 -1.7198 1.2950 28 1 1.7517 -0.1584 2.1368 29 1 3.4502 -2.2252 2.8759 30 1 4.2792 -0.6772 3.2552 31 1 5.7497 -2.8993 2.6165 32 1 6.2435 -1.2891 1.9988 33 1 7.1360 -2.4953 -3.4317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306540659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:14 Heat of formation + Delta-G solvation = -91.600348 kcal Electronic energy + Delta-G solvation = -13328.242378 eV Core-core repulsion = 11159.202232 eV Total energy + Delta-G solvation = -2169.040147 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.29006 -37.04144 -34.69431 -32.77507 -31.51692 -28.24040 -27.99187 -25.06787 -22.14195 -22.10646 -20.53160 -18.94141 -17.55713 -16.98717 -16.10186 -15.71037 -15.18996 -14.75453 -14.38772 -14.21213 -13.77873 -13.40243 -13.06180 -12.96364 -12.81117 -12.48008 -12.41288 -12.30780 -11.79006 -11.68039 -11.56829 -11.33379 -11.25816 -11.10177 -10.83498 -9.93107 -8.36530 -6.47891 1.32297 1.40523 1.49935 2.36130 2.89208 3.44916 3.82167 3.90368 4.09652 4.15659 4.29043 4.33720 4.53529 4.61882 4.75088 4.82158 4.87159 4.94454 4.97466 4.98096 5.06851 5.13014 5.16490 5.30276 5.41965 5.46221 5.56058 5.57068 5.61489 6.15213 6.52758 6.75406 7.29383 8.78302 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.013249 C = 0.010875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.596295 B = 2112.827639 C = 2573.997373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.144 4.144 4 C -0.102 4.102 5 C 0.067 3.933 6 H 0.051 0.949 7 C -0.138 4.138 8 C -0.134 4.134 9 C 0.163 3.837 10 H 0.036 0.964 11 C -0.538 4.538 12 H 0.039 0.961 13 C 0.027 3.973 14 N -0.942 5.942 15 Si 0.963 3.037 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.253 1.253 19 O -0.411 6.411 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.484 3.691 9.191 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.140 4.140 5 C 0.009 3.991 6 H 0.069 0.931 7 C -0.175 4.175 8 C -0.172 4.172 9 C 0.107 3.893 10 H 0.053 0.947 11 C -0.575 4.575 12 H 0.057 0.943 13 C -0.172 4.172 14 N -0.582 5.582 15 Si 0.790 3.210 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.177 1.177 19 O -0.333 6.333 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.520 3.653 8.847 16.565 hybrid contribution 0.303 -0.271 -0.785 0.884 sum -13.217 3.381 8.062 15.847 Atomic orbital electron populations 1.21777 0.93491 1.01806 1.02426 1.21094 0.96820 0.96444 0.97888 1.21849 1.00331 0.95632 1.02329 1.21761 0.92516 1.01054 0.98627 1.23126 0.95685 0.93020 0.87223 0.93116 1.23247 0.95800 1.01173 0.97310 1.22954 0.98014 1.00992 0.95237 1.20672 0.83647 0.91922 0.93028 0.94669 1.21713 1.00294 1.41154 0.94382 0.94279 1.25875 0.98950 0.94978 0.97433 1.70064 1.33169 1.49432 1.05538 0.85423 0.79599 0.78533 0.77472 1.20518 1.21868 1.17745 1.88338 1.47877 1.54607 1.42439 0.90948 0.92605 0.92921 0.94465 0.94336 0.92722 0.90702 0.91830 0.88377 0.89479 0.88365 0.89947 0.92536 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.10 -3.03 2.89 -10.79 -0.03 -3.06 16 3 C -0.14 -3.86 8.97 71.98 0.65 -3.22 16 4 C -0.10 -2.89 4.42 30.59 0.14 -2.76 16 5 C 0.07 2.40 3.27 31.26 0.10 2.50 16 6 H 0.05 1.93 6.32 -2.38 -0.02 1.91 16 7 C -0.14 -4.20 6.57 32.05 0.21 -3.99 16 8 C -0.13 -5.22 6.53 31.86 0.21 -5.01 16 9 C 0.16 8.04 2.82 30.32 0.09 8.13 16 10 H 0.04 1.76 7.14 -2.39 -0.02 1.75 16 11 C -0.54 -32.31 9.33 25.60 0.24 -32.07 16 12 H 0.04 2.54 7.76 -2.91 -0.02 2.52 16 13 C 0.03 1.64 5.47 84.66 0.46 2.11 16 14 N -0.94 -61.00 13.96 21.45 0.30 -60.70 16 15 Si 0.96 49.85 26.31 68.60 1.80 51.66 16 16 H -0.28 -14.53 7.11 99.48 0.71 -13.83 16 17 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 18 H -0.25 -12.47 6.51 99.48 0.65 -11.82 16 19 O -0.41 -19.55 8.30 -148.98 -1.24 -20.78 16 20 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.04 1.38 7.88 -2.38 -0.02 1.36 16 24 H 0.04 1.20 6.44 -2.39 -0.02 1.18 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.33 8.06 -2.39 -0.02 2.31 16 30 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.06 2.33 7.65 -2.39 -0.02 2.31 16 33 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -69.30 261.58 4.58 -64.73 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.99 Total: 4.87 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 2.72 Total: -39.77 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.30 Total: -60.70 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.24 Total: -20.78 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 1.80 Total: 51.66 kcal Total: -69.30 4.58 -64.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306540659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.873 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds