Wall clock time and date at job start Mon Mar 30 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 C 1.53000 * 109.46875 * 119.99887 * 2 1 3 5 5 C 1.52995 * 109.46843 * 174.99592 * 4 2 1 6 6 H 1.09000 * 110.27907 * 304.36203 * 5 4 2 7 7 C 1.54956 * 110.39240 * 182.21662 * 5 4 2 8 8 C 1.55452 * 100.99076 * 204.64967 * 7 5 4 9 9 C 1.54389 * 102.18372 * 34.04014 * 8 7 5 10 10 H 1.08989 * 109.83131 * 98.30172 * 9 8 7 11 11 C 1.50699 * 109.82633 * 219.18215 * 9 8 7 12 12 H 1.08002 * 120.00511 * 359.81672 * 11 9 8 13 13 C 1.37884 * 119.99783 * 179.81359 * 11 9 8 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 O 1.43234 * 107.66266 * 338.73924 * 9 8 7 20 20 H 1.08998 * 109.46985 * 300.00528 * 1 2 3 21 21 H 1.09005 * 109.46726 * 59.99568 * 1 2 3 22 22 H 1.08999 * 109.47653 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46985 * 239.99471 * 2 1 3 24 24 H 1.08998 * 109.46948 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46810 * 300.00159 * 3 2 1 26 26 H 1.09001 * 109.46975 * 59.99821 * 3 2 1 27 27 H 1.09003 * 109.47042 * 54.99768 * 4 2 1 28 28 H 1.09004 * 109.47370 * 295.00226 * 4 2 1 29 29 H 1.09003 * 111.11994 * 322.52179 * 7 5 4 30 30 H 1.09002 * 111.12377 * 86.63646 * 7 5 4 31 31 H 1.08999 * 110.83375 * 275.89082 * 8 7 5 32 32 H 1.08994 * 110.92118 * 152.22328 * 8 7 5 33 33 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8311 1.1879 6 1 3.8711 -1.3248 0.2657 7 6 4.1000 -1.6080 2.4172 8 6 5.5512 -1.0581 2.5064 9 6 5.3759 0.4020 2.0364 10 1 5.3109 1.0633 2.9003 11 6 6.5428 0.8042 1.1717 12 1 7.3364 0.0991 0.9734 13 6 6.5971 2.0725 0.6336 14 7 7.6128 2.4217 -0.1255 15 14 5.2241 3.2919 0.9758 16 1 5.5446 4.0671 2.2012 17 1 5.0878 4.2199 -0.1755 18 1 3.9483 2.5582 1.1738 19 8 4.1626 0.4718 1.2784 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6053 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.5322 -1.3625 3.3147 30 1 4.0964 -2.6826 2.2348 31 1 6.2147 -1.6045 1.8361 32 1 5.9187 -1.0940 3.5319 33 1 7.6490 3.3127 -0.5073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306540660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:15 Heat of formation + Delta-G solvation = -83.638880 kcal Electronic energy + Delta-G solvation = -13519.950206 eV Core-core repulsion = 11351.255295 eV Total energy + Delta-G solvation = -2168.694912 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26123 -36.87254 -34.62781 -32.77094 -31.47174 -28.19253 -27.88415 -25.00520 -22.07643 -21.84366 -20.80595 -18.85370 -17.51394 -17.02008 -16.20274 -15.40281 -14.97296 -14.69558 -14.26789 -14.17550 -13.89599 -13.31786 -13.09984 -12.95732 -12.72433 -12.64106 -12.20660 -11.99987 -11.63565 -11.47850 -11.44735 -11.29720 -11.12629 -10.89281 -10.63406 -9.87729 -8.31163 -6.42859 1.39481 1.42280 1.73616 2.47014 2.98996 3.48072 3.85640 3.95205 4.16111 4.25257 4.30815 4.45635 4.59973 4.66509 4.80944 4.92021 4.94580 4.96172 5.01873 5.03514 5.14212 5.18364 5.32612 5.38363 5.42288 5.55358 5.60973 5.63774 5.88971 6.20044 6.58945 6.82133 7.35117 8.83047 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.015011 C = 0.011234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.596681 B = 1864.824157 C = 2491.927625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 C -0.162 4.162 4 C -0.101 4.101 5 C 0.064 3.936 6 H 0.042 0.958 7 C -0.137 4.137 8 C -0.135 4.135 9 C 0.164 3.836 10 H 0.035 0.965 11 C -0.539 4.539 12 H 0.031 0.969 13 C 0.023 3.977 14 N -0.948 5.948 15 Si 0.918 3.082 16 H -0.287 1.287 17 H -0.300 1.300 18 H -0.174 1.174 19 O -0.381 6.381 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.942 -6.549 4.051 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.219 4.219 4 C -0.139 4.139 5 C 0.006 3.994 6 H 0.060 0.940 7 C -0.174 4.174 8 C -0.172 4.172 9 C 0.108 3.892 10 H 0.052 0.948 11 C -0.576 4.576 12 H 0.049 0.951 13 C -0.175 4.175 14 N -0.589 5.589 15 Si 0.742 3.258 16 H -0.213 1.213 17 H -0.227 1.227 18 H -0.096 1.096 19 O -0.302 6.302 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.968 -6.261 3.874 16.681 hybrid contribution 0.665 0.764 -0.289 1.053 sum -14.303 -5.498 3.585 15.737 Atomic orbital electron populations 1.21789 0.93793 1.02217 1.01762 1.21060 0.96403 0.95797 0.97964 1.22261 1.03013 0.96555 1.00050 1.21771 0.92439 1.01415 0.98246 1.23038 0.94084 0.85346 0.96919 0.93987 1.23244 0.94773 1.00740 0.98638 1.22967 0.97525 0.95577 1.01162 1.20536 0.83173 0.94738 0.90748 0.94765 1.21710 1.05645 0.98165 1.32108 0.95091 1.25954 0.97592 1.00628 0.93348 1.70095 1.33128 1.20888 1.34760 0.86363 0.84828 0.77971 0.76632 1.21332 1.22692 1.09573 1.88726 1.38323 1.28051 1.75112 0.92600 0.92758 0.91479 0.92303 0.91352 0.93859 0.93481 0.88960 0.91583 0.89487 0.88923 0.92957 0.90260 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.19 71.98 0.66 -2.26 16 2 C -0.09 -2.60 2.92 -10.79 -0.03 -2.63 16 3 C -0.16 -5.45 7.86 71.98 0.57 -4.89 16 4 C -0.10 -2.73 4.55 30.59 0.14 -2.59 16 5 C 0.06 2.19 3.39 31.26 0.11 2.29 16 6 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 7 C -0.14 -4.04 6.58 32.11 0.21 -3.83 16 8 C -0.13 -5.13 6.54 31.91 0.21 -4.92 16 9 C 0.16 7.74 2.82 30.32 0.09 7.82 16 10 H 0.03 1.62 7.55 -2.39 -0.02 1.61 16 11 C -0.54 -31.84 9.33 25.60 0.24 -31.60 16 12 H 0.03 2.02 7.76 -2.91 -0.02 1.99 16 13 C 0.02 1.39 5.47 84.66 0.46 1.86 16 14 N -0.95 -61.73 13.96 21.45 0.30 -61.43 16 15 Si 0.92 45.61 26.45 68.60 1.81 47.42 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 17 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 18 H -0.17 -7.82 3.55 99.48 0.35 -7.47 16 19 O -0.38 -16.65 4.90 -148.98 -0.73 -17.38 16 20 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.07 2.82 3.60 -2.39 -0.01 2.82 16 25 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 2.25 8.06 -2.39 -0.02 2.23 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 2.15 7.66 -2.39 -0.02 2.13 16 32 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -67.89 254.21 4.73 -63.16 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.70 Total: 8.98 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.65 Total: -40.75 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.30 Total: -61.43 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.73 Total: -17.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.81 Total: 47.42 kcal Total: -67.89 4.73 -63.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306540660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.478 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds