Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00164 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 H 1.09003 * 110.55355 * 303.57355 * 5 4 2 7 7 C 1.54991 * 110.61956 * 180.51964 * 5 4 2 8 8 C 1.54810 * 102.09731 * 204.47151 * 7 5 4 9 9 C 1.54106 * 104.18381 * 20.88478 * 8 7 5 10 10 H 1.08997 * 109.87726 * 242.60624 * 9 8 7 11 11 C 1.50698 * 109.88023 * 121.45122 * 9 8 7 12 12 H 1.08002 * 120.00006 * 0.71674 * 11 9 8 13 13 C 1.37871 * 119.99971 * 180.71289 * 11 9 8 14 14 N 1.31515 * 120.00188 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99818 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47159 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47272 * 120.00061 * 15 13 11 18 18 H 1.48506 * 109.47079 * 239.99763 * 15 13 11 19 19 O 1.43744 * 107.29201 * 2.02882 * 9 8 7 20 20 H 1.08997 * 109.47474 * 299.99873 * 1 2 3 21 21 H 1.09002 * 109.46922 * 60.00471 * 1 2 3 22 22 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47521 * 239.99933 * 2 1 3 24 24 H 1.09003 * 109.47743 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47112 * 300.00053 * 3 2 1 26 26 H 1.09006 * 109.47389 * 59.99876 * 3 2 1 27 27 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 28 28 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 29 29 H 1.09002 * 110.91064 * 322.67609 * 7 5 4 30 30 H 1.09006 * 110.90643 * 86.27592 * 7 5 4 31 31 H 1.08997 * 110.49073 * 262.21079 * 8 7 5 32 32 H 1.08995 * 110.48884 * 139.55489 * 8 7 5 33 33 H 0.96998 * 119.99884 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.8757 -1.3366 0.2737 7 6 4.1094 -1.5703 2.4367 8 6 5.5598 -1.0360 2.5231 9 6 5.5263 0.2790 1.7202 10 1 6.1901 0.2043 0.8589 11 6 5.9502 1.4272 2.5994 12 1 6.2300 1.2460 3.6267 13 6 5.9809 2.7089 2.0923 14 7 5.6408 2.9294 0.8412 15 14 6.5070 4.1320 3.1819 16 1 6.8387 3.6220 4.5365 17 1 7.7022 4.7895 2.5948 18 1 5.3991 5.1160 3.2804 19 8 4.1726 0.4755 1.2785 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.7516 -0.1584 2.1370 28 1 1.6054 -1.7198 1.2951 29 1 3.5417 -1.3002 3.3271 30 1 4.1009 -2.6496 2.2842 31 1 6.2544 -1.7426 2.0690 32 1 5.8341 -0.8428 3.5601 33 1 5.6628 3.8311 0.4843 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306540662.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = -88.482838 kcal Electronic energy + Delta-G solvation = -13393.991645 eV Core-core repulsion = 11225.086683 eV Total energy + Delta-G solvation = -2168.904962 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05468 -36.82875 -34.58222 -32.58133 -31.12712 -28.00311 -27.78972 -25.15143 -22.21604 -21.57132 -20.80995 -18.77214 -17.14364 -16.51691 -16.03361 -15.83738 -14.94828 -14.73730 -14.16299 -14.00682 -13.65413 -13.20131 -12.94996 -12.85508 -12.69647 -12.51273 -12.44578 -12.05406 -11.77851 -11.52528 -11.46998 -11.28537 -11.02951 -10.87446 -10.58074 -9.81766 -8.10634 -6.29842 1.39030 1.40389 1.52159 2.41868 3.09696 3.65340 3.85593 4.06030 4.20941 4.26963 4.30458 4.49626 4.57175 4.77804 4.81767 4.90843 4.94069 4.99477 5.06262 5.12737 5.17116 5.18563 5.35328 5.40569 5.46278 5.56426 5.62987 5.76453 5.99514 6.27104 6.62708 7.07593 7.44621 8.96631 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035434 B = 0.011972 C = 0.009688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.001865 B = 2338.276004 C = 2889.612495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.096 4.096 5 C 0.052 3.948 6 H 0.048 0.952 7 C -0.135 4.135 8 C -0.142 4.142 9 C 0.191 3.809 10 H -0.016 1.016 11 C -0.552 4.552 12 H 0.059 0.941 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.282 1.282 19 O -0.363 6.363 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.040 0.960 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.362 -7.475 0.336 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.134 4.134 5 C -0.006 4.006 6 H 0.065 0.935 7 C -0.173 4.173 8 C -0.180 4.180 9 C 0.135 3.865 10 H 0.002 0.998 11 C -0.590 4.590 12 H 0.078 0.922 13 C -0.177 4.177 14 N -0.533 5.533 15 Si 0.780 3.220 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.208 1.208 19 O -0.283 6.283 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.476 -7.148 0.158 10.344 hybrid contribution 0.693 0.922 0.336 1.202 sum -6.783 -6.225 0.494 9.220 Atomic orbital electron populations 1.21789 0.93769 1.02310 1.01634 1.21039 0.96402 0.95574 0.97762 1.21931 1.03212 0.96277 0.98951 1.21640 0.92467 1.01181 0.98061 1.23256 0.94651 0.86422 0.96311 0.93456 1.23050 0.95229 1.00502 0.98478 1.22936 0.97396 0.96889 1.00753 1.20177 0.81945 0.92955 0.91423 0.99813 1.21604 1.46082 0.93332 0.97979 0.92245 1.25875 0.94144 1.01558 0.96153 1.70170 1.46804 1.21294 1.15029 0.85567 0.77832 0.79158 0.79393 1.18844 1.20227 1.20781 1.89243 1.26256 1.25066 1.87730 0.93170 0.92489 0.91106 0.91774 0.91535 0.94089 0.95248 0.92868 0.88696 0.91346 0.88822 0.91661 0.92000 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 2 C -0.09 -2.87 2.92 -10.79 -0.03 -2.90 16 3 C -0.15 -5.94 8.61 71.98 0.62 -5.32 16 4 C -0.10 -3.11 4.57 30.60 0.14 -2.97 16 5 C 0.05 2.02 3.28 31.27 0.10 2.13 16 6 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 7 C -0.14 -4.72 6.59 31.89 0.21 -4.51 16 8 C -0.14 -5.94 6.63 31.59 0.21 -5.73 16 9 C 0.19 10.22 3.26 30.22 0.10 10.32 16 10 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C -0.55 -32.00 8.78 25.60 0.22 -31.78 16 12 H 0.06 3.34 7.33 -2.91 -0.02 3.32 16 13 C 0.02 1.44 5.41 84.65 0.46 1.90 16 14 N -0.90 -54.59 12.92 21.45 0.28 -54.32 16 15 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 19 O -0.36 -18.79 7.10 -148.98 -1.06 -19.85 16 20 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.07 3.35 5.30 -2.39 -0.01 3.34 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.35 8.06 -2.39 -0.02 2.33 16 30 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.59 7.40 -2.39 -0.02 2.57 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -64.91 264.23 4.98 -59.93 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.05 Total: 8.80 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 2.69 Total: -41.64 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.32 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.06 Total: -19.85 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.91 4.98 -59.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306540662.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.553 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds