Wall clock time and date at job start Mon Mar 30 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53092 * 109.48839 * 120.02943 * 2 1 3 5 5 C 1.53180 * 109.16230 * 62.38200 * 4 2 1 6 6 C 1.52997 * 109.61528 * 176.89018 * 5 4 2 7 7 C 1.50698 * 109.47236 * 65.39748 * 6 5 4 8 8 H 1.07997 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00207 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00444 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99860 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47076 * 90.00357 * 11 9 7 13 13 H 1.48498 * 109.47217 * 210.00047 * 11 9 7 14 14 H 1.48496 * 109.47060 * 330.00381 * 11 9 7 15 15 C 1.53176 * 109.03765 * 56.97562 * 5 4 2 16 16 C 1.53086 * 109.16508 * 303.01914 * 15 5 4 17 17 H 1.08998 * 109.47969 * 297.62636 * 16 15 5 18 18 C 1.52996 * 109.49004 * 177.59751 * 16 15 5 19 19 O 1.42900 * 109.41513 * 57.61096 * 16 15 5 20 20 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 22 22 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 23 23 H 1.09004 * 109.51838 * 182.28278 * 4 2 1 24 24 H 1.08994 * 109.52346 * 302.47363 * 4 2 1 25 25 H 1.09005 * 109.53996 * 297.10627 * 5 4 2 26 26 H 1.09000 * 109.47409 * 185.39743 * 6 5 4 27 27 H 1.09004 * 109.47158 * 305.39495 * 6 5 4 28 28 H 0.97001 * 120.00158 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.51886 * 183.11059 * 15 5 4 30 30 H 1.09005 * 109.51985 * 62.93119 * 15 5 4 31 31 H 1.09004 * 109.47374 * 300.05275 * 18 16 15 32 32 H 1.09004 * 109.47210 * 60.05008 * 18 16 15 33 33 H 1.09000 * 109.47228 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7222 1.2495 5 6 1.5762 -2.1814 1.2120 6 6 2.1457 -2.9329 2.4169 7 6 1.5562 -2.3699 3.6845 8 1 0.8468 -1.5571 3.6356 9 6 1.9235 -2.8917 4.9067 10 7 1.4095 -2.4001 6.0129 11 14 3.1512 -4.2971 4.9914 12 1 4.5270 -3.7472 5.0921 13 1 2.8642 -5.1340 6.1840 14 1 3.0385 -5.1274 3.7653 15 6 2.0769 -2.8321 -0.0811 16 6 1.5647 -2.0284 -1.2792 17 1 0.4751 -2.0551 -1.2958 18 6 2.1097 -2.6370 -2.5727 19 8 2.0065 -0.6741 -1.1665 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1301 -0.6872 1.2707 24 1 1.6424 -0.2359 2.1398 25 1 0.4872 -2.2181 1.2408 26 1 1.8940 -3.9905 2.3377 27 1 3.2294 -2.8179 2.4378 28 1 1.6676 -2.7675 6.8728 29 1 1.7042 -3.8547 -0.1423 30 1 3.1669 -2.8398 -0.0867 31 1 3.1993 -2.6106 -2.5558 32 1 1.7727 -3.6700 -2.6585 33 1 1.7453 -2.0642 -3.4255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306563804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:41 Heat of formation + Delta-G solvation = -75.537262 kcal Electronic energy + Delta-G solvation = -13302.983337 eV Core-core repulsion = 11134.639737 eV Total energy + Delta-G solvation = -2168.343599 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50162 -34.65919 -33.01136 -32.23665 -29.84057 -27.48400 -26.19965 -23.09153 -22.21764 -20.02011 -18.74447 -16.76483 -15.89340 -15.47836 -14.65162 -14.22078 -13.96086 -13.39575 -12.75132 -12.56106 -12.42237 -11.89197 -11.86412 -11.66965 -11.50374 -11.27457 -10.84060 -10.57626 -10.41165 -10.35451 -9.93063 -9.62754 -9.40058 -9.03932 -8.74176 -8.52295 -6.03154 -4.00234 3.31217 3.38659 3.42617 4.09427 4.46367 5.11261 5.19351 5.29554 5.38241 5.43788 5.48921 5.56986 5.74085 5.84273 5.88555 5.96315 6.00528 6.15154 6.26175 6.39603 6.40029 6.46563 6.63614 6.81608 6.93692 6.99108 7.28933 7.46019 7.65900 7.81684 8.55643 9.01676 9.60074 11.10178 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047150 B = 0.009976 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.706394 B = 2806.173948 C = 3214.606013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.094 0.906 4 C -0.133 4.133 5 C -0.074 4.074 6 C -0.008 4.008 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.065 3.935 10 N -0.905 5.905 11 Si 0.878 3.122 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.266 1.266 15 C -0.147 4.147 16 C 0.083 3.917 17 H 0.056 0.944 18 C -0.143 4.143 19 O -0.383 6.383 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.338 0.959 -13.413 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.028 3.972 3 H 0.111 0.889 4 C -0.171 4.171 5 C -0.093 4.093 6 C -0.046 4.046 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.544 5.544 11 Si 0.706 3.294 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.191 1.191 15 C -0.184 4.184 16 C 0.025 3.975 17 H 0.074 0.926 18 C -0.200 4.200 19 O -0.302 6.302 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.457 1.022 -13.354 13.401 hybrid contribution 0.472 -0.868 0.542 1.127 sum 0.930 0.154 -12.813 12.847 Atomic orbital electron populations 1.22426 0.96886 1.02802 1.01922 1.22247 0.93233 0.95948 0.85819 0.88864 1.22141 1.01051 0.96643 0.97226 1.21093 0.99891 0.94359 0.93945 1.19614 0.95839 0.95479 0.93642 1.21141 1.26039 1.18986 0.89068 0.90917 1.25033 0.96087 0.96687 0.95769 1.69916 1.44308 1.42505 0.97706 0.86801 0.81941 0.83059 0.77623 1.20374 1.21476 1.19084 1.22353 1.01498 0.99184 0.95411 1.22061 0.97761 0.82614 0.95044 0.92596 1.21758 1.01888 1.00035 0.96305 1.87878 1.74122 1.24535 1.43710 0.91748 0.91416 0.92816 0.91994 0.89879 0.91724 0.96700 0.97096 0.92825 0.91722 0.91716 0.92100 0.91478 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.65 37.16 0.32 -2.34 16 2 C 0.08 1.36 3.91 -26.68 -0.10 1.25 16 3 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.13 -2.50 4.69 -26.59 -0.12 -2.63 16 5 C -0.07 -1.48 1.91 -90.44 -0.17 -1.65 16 6 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 7 C -0.51 -14.49 9.01 -34.44 -0.31 -14.80 16 8 H 0.07 2.18 7.34 -52.49 -0.39 1.80 16 9 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.91 -27.93 13.96 55.43 0.77 -27.16 16 11 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 15 C -0.15 -2.47 4.71 -26.60 -0.13 -2.60 16 16 C 0.08 1.24 2.94 -26.69 -0.08 1.16 16 17 H 0.06 0.82 6.34 -51.93 -0.33 0.49 16 18 C -0.14 -1.75 9.56 37.16 0.36 -1.39 16 19 O -0.38 -6.33 10.24 -35.23 -0.36 -6.69 16 20 H 0.06 0.97 4.98 -51.93 -0.26 0.71 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.69 7.09 -51.93 -0.37 1.33 16 25 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 26 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 255.52 15.07 3.85 3.85 Total: -1.00 -30.16 255.52 -6.26 -36.43 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.42 Total: -2.20 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -0.43 Total: -21.50 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.16 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.36 Total: -6.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.16 -6.26 -36.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306563804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.110 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds