Wall clock time and date at job start Mon Mar 30 2020 02:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53092 * 109.48839 * 120.02943 * 2 1 3 5 5 C 1.53180 * 109.16230 * 62.38200 * 4 2 1 6 6 C 1.52997 * 109.61528 * 176.89018 * 5 4 2 7 7 C 1.50698 * 109.47236 * 65.39748 * 6 5 4 8 8 H 1.07997 * 120.00418 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00207 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00444 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99860 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47076 * 90.00357 * 11 9 7 13 13 H 1.48498 * 109.47217 * 210.00047 * 11 9 7 14 14 H 1.48496 * 109.47060 * 330.00381 * 11 9 7 15 15 C 1.53176 * 109.03765 * 56.97562 * 5 4 2 16 16 C 1.53086 * 109.16508 * 303.01914 * 15 5 4 17 17 H 1.08998 * 109.47969 * 297.62636 * 16 15 5 18 18 C 1.52996 * 109.49004 * 177.59751 * 16 15 5 19 19 O 1.42900 * 109.41513 * 57.61096 * 16 15 5 20 20 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 22 22 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 23 23 H 1.09004 * 109.51838 * 182.28278 * 4 2 1 24 24 H 1.08994 * 109.52346 * 302.47363 * 4 2 1 25 25 H 1.09005 * 109.53996 * 297.10627 * 5 4 2 26 26 H 1.09000 * 109.47409 * 185.39743 * 6 5 4 27 27 H 1.09004 * 109.47158 * 305.39495 * 6 5 4 28 28 H 0.97001 * 120.00158 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.51886 * 183.11059 * 15 5 4 30 30 H 1.09005 * 109.51985 * 62.93119 * 15 5 4 31 31 H 1.09004 * 109.47374 * 300.05275 * 18 16 15 32 32 H 1.09004 * 109.47210 * 60.05008 * 18 16 15 33 33 H 1.09000 * 109.47228 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0408 -0.7222 1.2495 5 6 1.5762 -2.1814 1.2120 6 6 2.1457 -2.9329 2.4169 7 6 1.5562 -2.3699 3.6845 8 1 0.8468 -1.5571 3.6356 9 6 1.9235 -2.8917 4.9067 10 7 1.4095 -2.4001 6.0129 11 14 3.1512 -4.2971 4.9914 12 1 4.5270 -3.7472 5.0921 13 1 2.8642 -5.1340 6.1840 14 1 3.0385 -5.1274 3.7653 15 6 2.0769 -2.8321 -0.0811 16 6 1.5647 -2.0284 -1.2792 17 1 0.4751 -2.0551 -1.2958 18 6 2.1097 -2.6370 -2.5727 19 8 2.0065 -0.6741 -1.1665 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1301 -0.6872 1.2707 24 1 1.6424 -0.2359 2.1398 25 1 0.4872 -2.2181 1.2408 26 1 1.8940 -3.9905 2.3377 27 1 3.2294 -2.8179 2.4378 28 1 1.6676 -2.7675 6.8728 29 1 1.7042 -3.8547 -0.1423 30 1 3.1669 -2.8398 -0.0867 31 1 3.1993 -2.6106 -2.5558 32 1 1.7727 -3.6700 -2.6585 33 1 1.7453 -2.0642 -3.4255 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306563804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:40 Heat of formation + Delta-G solvation = -94.177995 kcal Electronic energy + Delta-G solvation = -13303.791659 eV Core-core repulsion = 11134.639737 eV Total energy + Delta-G solvation = -2169.151922 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83757 -36.35239 -34.29559 -34.20081 -31.31371 -29.15133 -27.49748 -24.91730 -23.51387 -21.62189 -20.14467 -18.92592 -17.17242 -16.83228 -16.44142 -15.68251 -15.49751 -14.91771 -14.64424 -14.02192 -13.61200 -13.51491 -13.30029 -12.92407 -12.78949 -12.62747 -12.51822 -12.20386 -12.07469 -11.85493 -11.74845 -11.42916 -10.98545 -10.79432 -10.73181 -10.16639 -8.28217 -6.30434 1.34001 1.35221 1.47137 2.35623 2.89869 3.06903 3.86930 3.88775 4.05044 4.09777 4.24737 4.38955 4.49879 4.54428 4.67964 4.71168 4.87013 4.91477 4.98141 5.07534 5.12365 5.15336 5.24508 5.31086 5.31720 5.39411 5.50896 5.66464 5.71905 6.31235 6.41264 6.76538 7.33379 8.88256 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047150 B = 0.009976 C = 0.008708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.706394 B = 2806.173948 C = 3214.606013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.110 0.890 4 C -0.131 4.131 5 C -0.074 4.074 6 C -0.006 4.006 7 C -0.519 4.519 8 H 0.037 0.963 9 C 0.002 3.998 10 N -0.952 5.952 11 Si 0.946 3.054 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.248 1.248 15 C -0.141 4.141 16 C 0.079 3.921 17 H 0.063 0.937 18 C -0.138 4.138 19 O -0.389 6.389 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.011 0.989 28 H 0.265 0.735 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -0.042 -15.470 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.127 0.873 4 C -0.168 4.168 5 C -0.092 4.092 6 C -0.043 4.043 7 C -0.557 4.557 8 H 0.055 0.945 9 C -0.194 4.194 10 N -0.593 5.593 11 Si 0.770 3.230 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.172 1.172 15 C -0.179 4.179 16 C 0.022 3.978 17 H 0.081 0.919 18 C -0.195 4.195 19 O -0.309 6.309 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.159 0.022 -15.436 15.480 hybrid contribution 0.195 -0.492 1.205 1.316 sum 1.354 -0.469 -14.231 14.303 Atomic orbital electron populations 1.22382 0.95789 1.02637 1.02821 1.22215 0.94080 0.96236 0.84271 0.87267 1.22070 1.00434 0.96402 0.97938 1.21019 0.99319 0.94773 0.94115 1.19575 0.95616 0.95769 0.93356 1.21446 1.25129 1.17912 0.91168 0.94484 1.25979 0.98339 0.99747 0.95337 1.70065 1.46319 1.44495 0.98458 0.85720 0.79270 0.79680 0.78359 1.19521 1.21026 1.17162 1.22304 1.01307 0.99950 0.94342 1.22224 0.98326 0.81715 0.95512 0.91916 1.21758 1.01747 1.01098 0.94902 1.87886 1.74404 1.25316 1.43291 0.92442 0.91779 0.90645 0.92759 0.92590 0.92480 0.96457 0.97035 0.92665 0.90408 0.91948 0.92246 0.89559 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.97 8.65 71.98 0.62 -4.34 16 2 C 0.09 2.73 3.91 30.63 0.12 2.85 16 3 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 4 C -0.13 -4.93 4.69 30.68 0.14 -4.79 16 5 C -0.07 -2.89 1.91 -10.68 -0.02 -2.91 16 6 C -0.01 -0.28 3.52 29.85 0.11 -0.17 16 7 C -0.52 -29.89 9.01 25.60 0.23 -29.66 16 8 H 0.04 2.33 7.34 -2.91 -0.02 2.31 16 9 C 0.00 0.13 5.47 84.65 0.46 0.60 16 10 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 11 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 15 C -0.14 -4.46 4.71 30.68 0.14 -4.31 16 16 C 0.08 2.17 2.94 30.62 0.09 2.26 16 17 H 0.06 1.65 6.34 -2.39 -0.02 1.63 16 18 C -0.14 -2.89 9.56 71.98 0.69 -2.20 16 19 O -0.39 -11.93 10.24 -148.98 -1.52 -13.46 16 20 H 0.06 1.66 4.98 -2.39 -0.01 1.65 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.06 2.38 7.09 -2.39 -0.02 2.36 16 25 H 0.06 2.31 6.62 -2.38 -0.02 2.29 16 26 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 27 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 28 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 29 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.85 255.52 4.25 -60.60 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.00 Total: 8.59 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 2.59 Total: -42.68 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.52 Total: -13.46 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -64.85 4.25 -60.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306563804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.577 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds