Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.49329 * 2 1 4 4 C 1.53098 * 109.48002 * 239.97173 * 2 1 3 5 5 C 1.53180 * 109.16075 * 297.62693 * 4 2 1 6 6 C 1.52997 * 109.53935 * 183.15144 * 5 4 2 7 7 C 1.50700 * 109.47566 * 294.55377 * 6 5 4 8 8 H 1.08004 * 119.99347 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00487 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99576 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46933 * 60.00106 * 11 9 7 13 13 H 1.48493 * 109.46945 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47194 * 300.00017 * 11 9 7 15 15 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 16 16 C 1.53092 * 109.16344 * 56.98567 * 15 5 4 17 17 H 1.09000 * 109.48212 * 62.37239 * 16 15 5 18 18 C 1.52999 * 109.48062 * 182.41091 * 16 15 5 19 19 O 1.42905 * 109.48333 * 120.03200 * 2 1 3 20 20 H 1.09002 * 109.46833 * 299.96421 * 1 2 3 21 21 H 1.08999 * 109.47234 * 59.97208 * 1 2 3 22 22 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.52270 * 177.71938 * 4 2 1 24 24 H 1.08998 * 109.51931 * 57.52860 * 4 2 1 25 25 H 1.08996 * 109.62096 * 62.93059 * 5 4 2 26 26 H 1.09001 * 109.47366 * 54.55621 * 6 5 4 27 27 H 1.09010 * 109.47070 * 174.55444 * 6 5 4 28 28 H 0.97007 * 119.99696 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.52714 * 297.07587 * 15 5 4 30 30 H 1.08998 * 109.52443 * 176.88852 * 15 5 4 31 31 H 1.09001 * 109.46907 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47213 * 299.93866 * 18 16 15 33 33 H 1.08996 * 109.47804 * 59.93929 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 1.5756 -2.1814 -1.2122 6 6 2.1466 -2.9314 -2.4172 7 6 1.5573 -2.3685 -3.6848 8 1 0.8468 -1.5565 -3.6357 9 6 1.9250 -2.8899 -4.9071 10 7 2.7897 -3.8789 -4.9667 11 14 1.1938 -2.1924 -6.4782 12 1 1.5350 -0.7512 -6.5856 13 1 1.7472 -2.9212 -7.6477 14 1 -0.2824 -2.3509 -6.4500 15 6 2.0764 -2.8322 0.0808 16 6 1.5645 -2.0285 1.2790 17 1 0.4750 -2.0551 1.2958 18 6 2.1100 -2.6373 2.5723 19 8 2.0066 -0.6743 1.1663 20 1 -0.3633 0.5133 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1297 -0.6874 -1.2710 24 1 1.6420 -0.2358 -2.1398 25 1 0.4867 -2.2194 -1.2415 26 1 3.2302 -2.8152 -2.4375 27 1 1.8961 -3.9894 -2.3387 28 1 3.0482 -4.2460 -5.8266 29 1 3.1664 -2.8401 0.0863 30 1 1.7037 -3.8547 0.1420 31 1 1.7458 -2.0647 3.4253 32 1 1.7728 -3.6703 2.6582 33 1 3.1995 -2.6111 2.5551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306563805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -78.993790 kcal Electronic energy + Delta-G solvation = -13270.234225 eV Core-core repulsion = 11101.740739 eV Total energy + Delta-G solvation = -2168.493486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.42787 -34.54595 -32.95343 -32.24162 -29.62867 -27.01401 -26.13065 -23.31766 -22.14895 -20.14354 -18.66189 -16.32406 -15.82797 -15.45523 -14.53106 -14.28189 -14.05504 -13.37748 -12.57860 -12.37695 -12.26083 -11.83391 -11.75532 -11.50225 -11.34394 -11.09332 -10.80157 -10.64348 -10.52928 -10.24235 -10.05910 -9.56876 -9.34071 -8.97027 -8.59265 -8.32803 -5.97983 -3.99781 3.33092 3.37865 3.39822 4.14498 4.46536 5.20214 5.24530 5.36458 5.44297 5.48374 5.55324 5.60251 5.79624 5.92386 5.97864 6.03834 6.05633 6.18471 6.32788 6.41264 6.50119 6.56276 6.73721 6.95678 7.07969 7.17283 7.68668 7.70686 7.84817 8.02112 8.45102 9.06393 9.63638 11.13332 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051476 B = 0.009220 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.814937 B = 3036.121373 C = 3399.798668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.092 0.908 4 C -0.131 4.131 5 C -0.083 4.083 6 C 0.029 3.971 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.144 4.144 16 C 0.082 3.918 17 H 0.055 0.945 18 C -0.142 4.142 19 O -0.383 6.383 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 4.548 10.565 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.027 3.973 3 H 0.110 0.890 4 C -0.169 4.169 5 C -0.101 4.101 6 C -0.008 4.008 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.182 4.182 16 C 0.025 3.975 17 H 0.072 0.928 18 C -0.200 4.200 19 O -0.303 6.303 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.805 4.512 10.575 11.834 hybrid contribution -0.526 0.173 -1.260 1.376 sum -3.331 4.686 9.315 10.946 Atomic orbital electron populations 1.22424 0.97047 1.02789 1.01736 1.22243 0.93098 0.95893 0.86075 0.89038 1.22130 1.01132 0.96911 0.96736 1.21273 0.99471 0.94327 0.95036 1.19118 0.96116 0.94956 0.90654 1.21207 1.25164 1.17859 0.91152 0.92732 1.25022 0.95243 0.95114 0.99115 1.69957 1.32947 1.25476 1.25175 0.86701 0.79420 0.79150 0.82989 1.20288 1.21327 1.20327 1.22314 1.01552 0.99094 0.95192 1.22087 0.97625 0.82579 0.95230 0.92754 1.21756 1.01934 1.00029 0.96249 1.87872 1.74127 1.24639 1.43615 0.92868 0.91631 0.91699 0.91932 0.90429 0.92357 0.96610 0.96704 0.93017 0.91689 0.91763 0.92562 0.91462 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.65 37.16 0.32 -2.34 16 2 C 0.08 1.37 3.91 -26.68 -0.10 1.26 16 3 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.13 -2.52 4.68 -26.59 -0.12 -2.64 16 5 C -0.08 -1.71 1.91 -90.44 -0.17 -1.88 16 6 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 7 C -0.52 -14.42 8.46 -34.44 -0.29 -14.71 16 8 H 0.05 1.47 7.09 -52.48 -0.37 1.10 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.14 -2.58 4.70 -26.59 -0.13 -2.70 16 16 C 0.08 1.29 2.94 -26.68 -0.08 1.21 16 17 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 18 C -0.14 -1.84 9.56 37.16 0.36 -1.48 16 19 O -0.38 -6.52 10.24 -35.23 -0.36 -6.88 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.99 4.98 -51.93 -0.26 0.73 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 25 H 0.06 1.21 6.62 -51.93 -0.34 0.86 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 259.11 15.07 3.90 3.90 Total: -1.00 -29.81 259.11 -6.64 -36.45 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.46 Total: -2.65 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.44 Total: -21.16 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.33 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.36 Total: -6.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.81 -6.64 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306563805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.541 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds