Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.49329 * 2 1 4 4 C 1.53098 * 109.48002 * 239.97173 * 2 1 3 5 5 C 1.53180 * 109.16075 * 297.62693 * 4 2 1 6 6 C 1.52997 * 109.53935 * 183.15144 * 5 4 2 7 7 C 1.50700 * 109.47566 * 294.55377 * 6 5 4 8 8 H 1.08004 * 119.99347 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00487 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99576 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00006 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46933 * 60.00106 * 11 9 7 13 13 H 1.48493 * 109.46945 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47194 * 300.00017 * 11 9 7 15 15 C 1.53175 * 109.03606 * 303.01560 * 5 4 2 16 16 C 1.53092 * 109.16344 * 56.98567 * 15 5 4 17 17 H 1.09000 * 109.48212 * 62.37239 * 16 15 5 18 18 C 1.52999 * 109.48062 * 182.41091 * 16 15 5 19 19 O 1.42905 * 109.48333 * 120.03200 * 2 1 3 20 20 H 1.09002 * 109.46833 * 299.96421 * 1 2 3 21 21 H 1.08999 * 109.47234 * 59.97208 * 1 2 3 22 22 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.52270 * 177.71938 * 4 2 1 24 24 H 1.08998 * 109.51931 * 57.52860 * 4 2 1 25 25 H 1.08996 * 109.62096 * 62.93059 * 5 4 2 26 26 H 1.09001 * 109.47366 * 54.55621 * 6 5 4 27 27 H 1.09010 * 109.47070 * 174.55444 * 6 5 4 28 28 H 0.97007 * 119.99696 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.52714 * 297.07587 * 15 5 4 30 30 H 1.08998 * 109.52443 * 176.88852 * 15 5 4 31 31 H 1.09001 * 109.46907 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47213 * 299.93866 * 18 16 15 33 33 H 1.08996 * 109.47804 * 59.93929 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2496 5 6 1.5756 -2.1814 -1.2122 6 6 2.1466 -2.9314 -2.4172 7 6 1.5573 -2.3685 -3.6848 8 1 0.8468 -1.5565 -3.6357 9 6 1.9250 -2.8899 -4.9071 10 7 2.7897 -3.8789 -4.9667 11 14 1.1938 -2.1924 -6.4782 12 1 1.5350 -0.7512 -6.5856 13 1 1.7472 -2.9212 -7.6477 14 1 -0.2824 -2.3509 -6.4500 15 6 2.0764 -2.8322 0.0808 16 6 1.5645 -2.0285 1.2790 17 1 0.4750 -2.0551 1.2958 18 6 2.1100 -2.6373 2.5723 19 8 2.0066 -0.6743 1.1663 20 1 -0.3633 0.5133 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1297 -0.6874 -1.2710 24 1 1.6420 -0.2358 -2.1398 25 1 0.4867 -2.2194 -1.2415 26 1 3.2302 -2.8152 -2.4375 27 1 1.8961 -3.9894 -2.3387 28 1 3.0482 -4.2460 -5.8266 29 1 3.1664 -2.8401 0.0863 30 1 1.7037 -3.8547 0.1420 31 1 1.7458 -2.0647 3.4253 32 1 1.7728 -3.6703 2.6582 33 1 3.1995 -2.6111 2.5551 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306563805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -96.763189 kcal Electronic energy + Delta-G solvation = -13271.004764 eV Core-core repulsion = 11101.740739 eV Total energy + Delta-G solvation = -2169.264024 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.81587 -36.32509 -34.24968 -34.19719 -31.07108 -28.80914 -27.47538 -25.25074 -23.49400 -21.76352 -20.11716 -18.48630 -17.15632 -16.88395 -16.45574 -15.77258 -15.45803 -14.88804 -14.18993 -14.00459 -13.58130 -13.41447 -13.18940 -12.86136 -12.76868 -12.65400 -12.53710 -12.49229 -12.04575 -11.86286 -11.77073 -11.35573 -10.97661 -10.76303 -10.53100 -10.12578 -8.18657 -6.28806 1.38896 1.41722 1.49425 2.40643 2.90991 3.14275 3.90005 3.91511 4.08207 4.11795 4.26560 4.39659 4.52272 4.56926 4.69942 4.72492 4.87407 4.94369 5.02417 5.11496 5.17835 5.21208 5.32670 5.34946 5.38340 5.45253 5.53960 5.77127 5.86616 6.26619 6.42141 6.86967 7.39723 8.93180 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051476 B = 0.009220 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.814937 B = 3036.121373 C = 3399.798668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.112 0.888 4 C -0.128 4.128 5 C -0.076 4.076 6 C 0.034 3.966 7 C -0.530 4.530 8 H 0.063 0.937 9 C -0.003 4.003 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.266 1.266 15 C -0.141 4.141 16 C 0.083 3.917 17 H 0.067 0.933 18 C -0.139 4.139 19 O -0.391 6.391 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.061 0.939 26 H -0.016 1.016 27 H -0.013 1.013 28 H 0.262 0.738 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 5.789 11.303 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.129 0.871 4 C -0.166 4.166 5 C -0.095 4.095 6 C -0.003 4.003 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.201 4.201 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.191 1.191 15 C -0.179 4.179 16 C 0.026 3.974 17 H 0.084 0.916 18 C -0.196 4.196 19 O -0.311 6.311 20 H 0.093 0.907 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.002 0.998 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.171 5.763 11.329 13.377 hybrid contribution -0.067 -0.252 -1.487 1.510 sum -4.238 5.511 9.842 12.049 Atomic orbital electron populations 1.22381 0.95382 1.02661 1.03122 1.22271 0.94388 0.96182 0.84130 0.87070 1.22062 1.00030 0.96137 0.98362 1.21125 0.99263 0.94986 0.94113 1.19012 0.94277 0.94036 0.93000 1.21614 1.25174 1.17964 0.92091 0.91897 1.25986 0.95618 0.95403 1.03050 1.70105 1.34452 1.26983 1.26143 0.85548 0.78934 0.78680 0.78197 1.19153 1.21066 1.19119 1.22276 1.00699 0.99764 0.95125 1.22189 0.98352 0.81708 0.95165 0.91556 1.21762 1.01618 1.01093 0.95111 1.87880 1.74546 1.25149 1.43486 0.90713 0.91051 0.92545 0.93683 0.91526 0.92066 0.99773 0.99501 0.92931 0.93051 0.91272 0.90941 0.89759 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.69 8.65 71.98 0.62 -4.07 16 2 C 0.09 2.66 3.91 30.63 0.12 2.78 16 3 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 4 C -0.13 -4.89 4.68 30.69 0.14 -4.75 16 5 C -0.08 -3.19 1.91 -10.68 -0.02 -3.21 16 6 C 0.03 1.82 4.45 29.85 0.13 1.95 16 7 C -0.53 -30.13 8.46 25.60 0.22 -29.91 16 8 H 0.06 3.39 7.09 -2.91 -0.02 3.37 16 9 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 10 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 11 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 15 C -0.14 -5.02 4.70 30.68 0.14 -4.88 16 16 C 0.08 2.44 2.94 30.62 0.09 2.53 16 17 H 0.07 1.82 6.34 -2.39 -0.02 1.81 16 18 C -0.14 -3.23 9.56 71.98 0.69 -2.54 16 19 O -0.39 -12.45 10.24 -148.98 -1.52 -13.97 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.06 1.58 4.98 -2.38 -0.01 1.56 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.07 2.65 7.09 -2.39 -0.02 2.64 16 25 H 0.06 2.51 6.62 -2.39 -0.02 2.49 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 28 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -64.29 259.11 4.44 -59.84 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.06 Total: 7.03 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 2.60 Total: -41.82 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.52 Total: -13.97 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.29 4.44 -59.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306563805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.919 kcal (2) G-P(sol) polarization free energy of solvation -64.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds