Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46791 * 60.00379 * 3 2 1 6 6 C 1.50703 * 109.47292 * 300.00418 * 3 2 1 7 7 H 1.08003 * 119.99742 * 359.97438 * 6 3 2 8 8 C 1.37873 * 119.99873 * 179.97438 * 6 3 2 9 9 N 1.31509 * 120.00433 * 359.97438 * 8 6 3 10 10 Si 1.86803 * 119.99975 * 179.97438 * 8 6 3 11 11 H 1.48506 * 109.47061 * 59.99778 * 10 8 6 12 12 H 1.48494 * 109.47452 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46988 * 300.00348 * 10 8 6 14 14 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 15 15 C 1.53002 * 109.46817 * 60.00169 * 14 2 1 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 2 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 20 20 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 21 21 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 22 22 H 0.96699 * 114.00407 * 299.99906 * 5 3 2 23 23 H 0.97001 * 120.00323 * 179.97438 * 9 8 6 24 24 H 1.08993 * 109.47194 * 299.99651 * 14 2 1 25 25 H 1.09002 * 109.46695 * 179.97438 * 14 2 1 26 26 H 1.08992 * 109.47063 * 299.99823 * 15 14 2 27 27 H 1.09004 * 109.46733 * 179.97438 * 15 14 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 29 29 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 30 30 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0005 5 8 1.5636 2.1161 1.1668 6 6 1.5375 2.1530 -1.2304 7 1 0.9169 1.6280 -1.9415 8 6 1.8701 3.4732 -1.4483 9 7 2.6254 4.1126 -0.5821 10 14 1.2480 4.3536 -2.9738 11 1 -0.2371 4.3529 -2.9747 12 1 1.7428 5.7537 -2.9737 13 1 1.7439 3.6538 -4.1861 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5300 -2.1637 -1.2494 18 6 2.0399 -0.7212 -1.2494 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.5997 2.1542 1.2331 23 1 2.8597 5.0413 -0.7356 24 1 1.6768 -0.2075 2.1391 25 1 3.1301 -0.7216 1.2488 26 1 0.4402 -2.1638 1.2491 27 1 1.8939 -2.6778 2.1388 28 1 3.1301 -2.8849 -0.0003 29 1 1.6764 -3.9125 -0.0005 30 1 1.8929 -2.6776 -2.1394 31 1 0.4400 -2.1637 -1.2493 32 1 1.6761 -0.2072 -2.1391 33 1 3.1299 -0.7212 -1.2494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306654165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -83.138890 kcal Electronic energy + Delta-G solvation = -13674.567060 eV Core-core repulsion = 11505.893829 eV Total energy + Delta-G solvation = -2168.673231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.96685 -35.16088 -32.07398 -31.22025 -30.16024 -26.53671 -26.04675 -22.94958 -21.90166 -20.12639 -17.59999 -16.79888 -15.30166 -14.56725 -14.13365 -13.99939 -13.90994 -13.09904 -12.78464 -12.26158 -11.93756 -11.61269 -11.50664 -11.10072 -10.86575 -10.83539 -10.66781 -10.36169 -10.34654 -10.00450 -9.93243 -9.54392 -9.36345 -8.66479 -8.45809 -7.87627 -5.92382 -4.08253 3.31963 3.37596 3.39095 4.44418 5.21770 5.29617 5.32414 5.35652 5.80555 5.85373 6.01715 6.03117 6.06154 6.11066 6.12152 6.34987 6.38683 6.48723 6.59305 6.66319 6.71513 6.75478 6.83565 6.99183 7.15890 7.23789 7.29496 7.84696 7.95740 8.30914 8.93533 9.47675 9.67771 11.11922 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050292 B = 0.011459 C = 0.010324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.609826 B = 2442.921604 C = 2711.565733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C 0.239 3.761 4 H 0.051 0.949 5 O -0.566 6.566 6 C -0.561 4.561 7 H 0.058 0.942 8 C 0.076 3.924 9 N -0.863 5.863 10 Si 0.884 3.116 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.097 4.097 19 H 0.044 0.956 20 H 0.060 0.940 21 H 0.040 0.960 22 H 0.342 0.658 23 H 0.259 0.741 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -10.129 0.587 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C 0.182 3.818 4 H 0.069 0.931 5 O -0.369 6.369 6 C -0.598 4.598 7 H 0.076 0.924 8 C -0.129 4.129 9 N -0.499 5.499 10 Si 0.711 3.289 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.142 4.142 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.135 4.135 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.059 0.941 22 H 0.186 0.814 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.075 -9.891 0.750 10.135 hybrid contribution -0.848 0.499 -1.058 1.445 sum -2.922 -9.393 -0.309 9.842 Atomic orbital electron populations 1.21844 0.95978 0.99505 1.01712 1.21201 0.95236 0.98738 0.93227 1.19360 0.94535 0.83991 0.83928 0.93118 1.86544 1.23567 1.80657 1.46150 1.21685 1.33633 0.96689 1.07838 0.92365 1.25057 0.94412 0.97721 0.95684 1.70068 1.34988 1.10427 1.34451 0.86827 0.79275 0.78820 0.83957 1.20275 1.21370 1.20279 1.21523 0.99876 0.93835 0.98941 1.21591 1.00609 0.96785 0.96729 1.21507 1.00393 0.97862 0.95570 1.21622 1.00628 0.97027 0.96627 1.21431 0.99828 0.93248 0.98976 0.93730 0.92073 0.94128 0.81350 0.93144 0.92040 0.92983 0.92207 0.93287 0.92535 0.93276 0.93191 0.92238 0.91124 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.22 37.16 0.27 -2.18 16 2 C -0.08 -1.66 0.36 -154.51 -0.06 -1.71 16 3 C 0.24 5.98 2.17 -27.88 -0.06 5.92 16 4 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 5 O -0.57 -14.63 12.01 -35.23 -0.42 -15.06 16 6 C -0.56 -15.01 7.30 -34.44 -0.25 -15.27 16 7 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 8 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 9 N -0.86 -25.73 12.84 55.43 0.71 -25.02 16 10 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.10 -1.88 4.59 -26.73 -0.12 -2.00 16 15 C -0.12 -1.78 5.65 -26.73 -0.15 -1.93 16 16 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 17 C -0.12 -1.86 5.65 -26.73 -0.15 -2.01 16 18 C -0.10 -1.82 4.48 -26.73 -0.12 -1.94 16 19 H 0.04 0.80 6.78 -51.93 -0.35 0.44 16 20 H 0.06 1.20 6.62 -51.93 -0.34 0.86 16 21 H 0.04 0.65 4.81 -51.93 -0.25 0.40 16 22 H 0.34 7.99 7.33 45.56 0.33 8.32 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 248.11 15.07 3.74 3.74 Total: -1.00 -29.14 248.11 -6.30 -35.45 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.41 Total: 5.51 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.90 Total: -20.87 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.71 Total: -25.02 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.42 Total: -15.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.14 -6.30 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.692 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds