Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46791 * 60.00379 * 3 2 1 6 6 C 1.50703 * 109.47292 * 300.00418 * 3 2 1 7 7 H 1.08003 * 119.99742 * 359.97438 * 6 3 2 8 8 C 1.37873 * 119.99873 * 179.97438 * 6 3 2 9 9 N 1.31509 * 120.00433 * 359.97438 * 8 6 3 10 10 Si 1.86803 * 119.99975 * 179.97438 * 8 6 3 11 11 H 1.48506 * 109.47061 * 59.99778 * 10 8 6 12 12 H 1.48494 * 109.47452 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46988 * 300.00348 * 10 8 6 14 14 C 1.52997 * 109.47457 * 120.00135 * 2 1 3 15 15 C 1.53002 * 109.46817 * 60.00169 * 14 2 1 16 16 C 1.53000 * 109.47233 * 60.00194 * 15 14 2 17 17 C 1.52997 * 109.47060 * 299.99657 * 16 15 14 18 18 C 1.52999 * 109.47317 * 59.99960 * 17 16 15 19 19 H 1.09004 * 109.46976 * 299.99579 * 1 2 3 20 20 H 1.09000 * 109.47380 * 59.99705 * 1 2 3 21 21 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 22 22 H 0.96699 * 114.00407 * 299.99906 * 5 3 2 23 23 H 0.97001 * 120.00323 * 179.97438 * 9 8 6 24 24 H 1.08993 * 109.47194 * 299.99651 * 14 2 1 25 25 H 1.09002 * 109.46695 * 179.97438 * 14 2 1 26 26 H 1.08992 * 109.47063 * 299.99823 * 15 14 2 27 27 H 1.09004 * 109.46733 * 179.97438 * 15 14 2 28 28 H 1.09002 * 109.47398 * 59.99826 * 16 15 14 29 29 H 1.09001 * 109.47194 * 180.02562 * 16 15 14 30 30 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0005 5 8 1.5636 2.1161 1.1668 6 6 1.5375 2.1530 -1.2304 7 1 0.9169 1.6280 -1.9415 8 6 1.8701 3.4732 -1.4483 9 7 2.6254 4.1126 -0.5821 10 14 1.2480 4.3536 -2.9738 11 1 -0.2371 4.3529 -2.9747 12 1 1.7428 5.7537 -2.9737 13 1 1.7439 3.6538 -4.1861 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5300 -2.1637 -1.2494 18 6 2.0399 -0.7212 -1.2494 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 0.5997 2.1542 1.2331 23 1 2.8597 5.0413 -0.7356 24 1 1.6768 -0.2075 2.1391 25 1 3.1301 -0.7216 1.2488 26 1 0.4402 -2.1638 1.2491 27 1 1.8939 -2.6778 2.1388 28 1 3.1301 -2.8849 -0.0003 29 1 1.6764 -3.9125 -0.0005 30 1 1.8929 -2.6776 -2.1394 31 1 0.4400 -2.1637 -1.2493 32 1 1.6761 -0.2072 -2.1391 33 1 3.1299 -0.7212 -1.2494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306654165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -102.072983 kcal Electronic energy + Delta-G solvation = -13675.388103 eV Core-core repulsion = 11505.893829 eV Total energy + Delta-G solvation = -2169.494274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50526 -36.97995 -34.21977 -32.77290 -31.52513 -28.45098 -27.63395 -24.76094 -23.28233 -21.59901 -19.13297 -18.86024 -16.95907 -16.64315 -15.76489 -15.53469 -15.35647 -14.84404 -14.36397 -13.74315 -13.56871 -13.32789 -12.96727 -12.76952 -12.66903 -12.55472 -12.28100 -11.98695 -11.80260 -11.75091 -11.40548 -11.02495 -10.86128 -10.66293 -10.42378 -9.79680 -8.06880 -6.29084 1.40243 1.41427 1.49068 2.41589 3.18490 3.93950 3.96784 4.05118 4.33036 4.42586 4.55959 4.63754 4.66558 4.74226 4.79331 4.92091 4.99244 5.15450 5.24986 5.26853 5.29291 5.39512 5.42426 5.54358 5.56732 5.61191 5.71703 5.84597 5.96779 6.22273 6.81929 7.40338 7.61372 8.97574 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050292 B = 0.011459 C = 0.010324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.609826 B = 2442.921604 C = 2711.565733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C 0.237 3.763 4 H 0.005 0.995 5 O -0.583 6.583 6 C -0.561 4.561 7 H 0.065 0.935 8 C 0.019 3.981 9 N -0.907 5.907 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.270 1.270 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.097 4.097 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.071 0.929 22 H 0.353 0.647 23 H 0.257 0.743 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -12.032 -0.027 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 C 0.180 3.820 4 H 0.023 0.977 5 O -0.387 6.387 6 C -0.599 4.599 7 H 0.083 0.917 8 C -0.182 4.182 9 N -0.546 5.546 10 Si 0.777 3.223 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.195 1.195 14 C -0.140 4.140 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.135 4.135 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.089 0.911 22 H 0.198 0.802 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.530 -11.814 0.127 12.330 hybrid contribution -0.358 1.093 -0.832 1.419 sum -3.888 -10.721 -0.706 11.426 Atomic orbital electron populations 1.21777 0.94330 1.01247 1.00984 1.21030 0.96438 0.95434 0.94921 1.19271 0.92135 0.87409 0.83213 0.97730 1.86483 1.24526 1.81346 1.46365 1.22041 1.32765 0.96809 1.08322 0.91664 1.25916 0.94709 0.98843 0.98736 1.70227 1.36916 1.10640 1.36770 0.85735 0.79055 0.77312 0.80210 1.19176 1.21515 1.19468 1.21470 0.98944 0.96238 0.97319 1.21556 1.01150 0.94163 0.98172 1.21519 1.00312 0.99128 0.94202 1.21576 1.01097 0.94306 0.98232 1.21392 0.98910 0.95800 0.97359 0.93620 0.93621 0.91076 0.80210 0.93397 0.93137 0.94551 0.91139 0.91396 0.92881 0.90244 0.91537 0.91274 0.93088 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.22 71.98 0.52 -3.90 16 2 C -0.08 -3.06 0.36 -52.18 -0.02 -3.08 16 3 C 0.24 12.22 2.17 29.85 0.06 12.28 16 4 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 5 O -0.58 -30.95 12.01 -148.98 -1.79 -32.74 16 6 C -0.56 -30.53 7.30 25.60 0.19 -30.34 16 7 H 0.07 3.40 5.68 -2.91 -0.02 3.38 16 8 C 0.02 1.07 5.40 84.65 0.46 1.53 16 9 N -0.91 -55.64 12.84 21.44 0.28 -55.37 16 10 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C -0.10 -3.60 4.59 30.59 0.14 -3.46 16 15 C -0.11 -2.99 5.65 30.60 0.17 -2.82 16 16 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 17 C -0.11 -3.15 5.65 30.59 0.17 -2.98 16 18 C -0.10 -3.56 4.48 30.60 0.14 -3.42 16 19 H 0.04 1.56 6.78 -2.38 -0.02 1.55 16 20 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 21 H 0.07 2.05 4.81 -2.39 -0.01 2.04 16 22 H 0.35 16.71 7.33 -74.06 -0.54 16.16 16 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.05 1.87 7.68 -2.39 -0.02 1.85 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.74 6.43 -2.39 -0.02 1.73 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.79 6.43 -2.39 -0.02 1.77 16 32 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -63.53 248.11 3.07 -60.45 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.55 Total: 20.45 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 2.01 Total: -38.82 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.79 Total: -32.74 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.53 3.07 -60.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.619 kcal (2) G-P(sol) polarization free energy of solvation -63.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds