Wall clock time and date at job start Mon Mar 30 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47031 * 300.00435 * 3 2 1 6 6 C 1.50701 * 109.46958 * 60.00407 * 3 2 1 7 7 H 1.08006 * 120.00174 * 359.97438 * 6 3 2 8 8 C 1.37876 * 120.00174 * 179.97438 * 6 3 2 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 3 10 10 Si 1.86792 * 120.00252 * 179.97438 * 8 6 3 11 11 H 1.48503 * 109.47178 * 60.00183 * 10 8 6 12 12 H 1.48503 * 109.47158 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47206 * 300.00466 * 10 8 6 14 14 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 15 15 C 1.52997 * 109.47317 * 60.00177 * 14 2 1 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 21 21 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 22 22 H 0.96698 * 114.00510 * 59.99842 * 5 3 2 23 23 H 0.97000 * 119.99425 * 179.97438 * 9 8 6 24 24 H 1.08996 * 109.46929 * 299.99280 * 14 2 1 25 25 H 1.09002 * 109.46716 * 180.02562 * 14 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 15 14 2 27 27 H 1.09001 * 109.46832 * 179.97438 * 15 14 2 28 28 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 29 29 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 30 30 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 32 32 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 33 33 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 8 1.5636 2.1162 -1.1667 6 6 1.5377 2.1529 1.2305 7 1 0.9165 1.6281 1.9413 8 6 1.8711 3.4727 1.4491 9 7 2.6272 4.1119 0.5833 10 14 1.2480 4.3534 2.9739 11 1 1.7420 3.6531 4.1867 12 1 1.7430 5.7535 2.9740 13 1 -0.2371 4.3539 2.9731 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5301 -2.1637 -1.2494 18 6 2.0400 -0.7212 -1.2493 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 0.5996 2.1543 -1.2329 23 1 2.8614 5.0406 0.7369 24 1 1.6768 -0.2075 2.1391 25 1 3.1300 -0.7209 1.2494 26 1 0.4401 -2.1639 1.2491 27 1 1.8938 -2.6778 2.1389 28 1 3.1301 -2.8849 -0.0002 29 1 1.6764 -3.9125 -0.0004 30 1 1.8930 -2.6777 -2.1394 31 1 0.4401 -2.1637 -1.2493 32 1 3.1300 -0.7212 -1.2494 33 1 1.6763 -0.2072 -2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306654168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:19 Heat of formation + Delta-G solvation = -83.147561 kcal Electronic energy + Delta-G solvation = -13674.461409 eV Core-core repulsion = 11505.787803 eV Total energy + Delta-G solvation = -2168.673607 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.96623 -35.16063 -32.07329 -31.22004 -30.16011 -26.53663 -26.04675 -22.94957 -21.90176 -20.12662 -17.60006 -16.79886 -15.30202 -14.56710 -14.13360 -13.99960 -13.90922 -13.09900 -12.78478 -12.26144 -11.93741 -11.61283 -11.50684 -11.10068 -10.86579 -10.83598 -10.66773 -10.36193 -10.34630 -10.00415 -9.93268 -9.54347 -9.36361 -8.66469 -8.45731 -7.87670 -5.92453 -4.08249 3.31951 3.37572 3.39086 4.44426 5.21786 5.29605 5.32388 5.35633 5.80569 5.85374 6.01700 6.03110 6.06142 6.11054 6.12161 6.34978 6.38672 6.48702 6.59310 6.66325 6.71496 6.75485 6.83535 6.99223 7.15874 7.23798 7.29507 7.84692 7.95767 8.30908 8.93545 9.47651 9.67729 11.11883 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050290 B = 0.011459 C = 0.010324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.632745 B = 2442.997400 C = 2711.463081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C 0.239 3.761 4 H 0.051 0.949 5 O -0.566 6.566 6 C -0.560 4.560 7 H 0.058 0.942 8 C 0.076 3.924 9 N -0.863 5.863 10 Si 0.884 3.116 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.097 4.097 15 C -0.122 4.122 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.104 4.104 19 H 0.040 0.960 20 H 0.060 0.940 21 H 0.044 0.956 22 H 0.342 0.658 23 H 0.259 0.741 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -10.129 -0.586 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C 0.182 3.818 4 H 0.069 0.931 5 O -0.369 6.369 6 C -0.598 4.598 7 H 0.076 0.924 8 C -0.129 4.129 9 N -0.499 5.499 10 Si 0.711 3.289 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.135 4.135 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.142 4.142 19 H 0.059 0.941 20 H 0.079 0.921 21 H 0.063 0.937 22 H 0.186 0.814 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.077 -9.892 -0.749 10.135 hybrid contribution -0.848 0.499 1.057 1.444 sum -2.925 -9.392 0.308 9.842 Atomic orbital electron populations 1.21845 0.95979 0.99506 1.01711 1.21203 0.95234 0.98736 0.93226 1.19360 0.94537 0.83989 0.83928 0.93113 1.86544 1.23565 1.80652 1.46160 1.21687 1.33589 0.96723 1.07841 0.92367 1.25061 0.94411 0.97726 0.95695 1.70075 1.34971 1.10431 1.34459 0.86824 0.79276 0.78817 0.83940 1.20275 1.21370 1.20281 1.21428 0.99831 0.93251 0.98975 1.21623 1.00624 0.97023 0.96627 1.21507 1.00393 0.97862 0.95569 1.21590 1.00611 0.96784 0.96730 1.21525 0.99877 0.93834 0.98942 0.94127 0.92075 0.93729 0.81350 0.93148 0.91128 0.92974 0.92230 0.93190 0.92534 0.93277 0.93286 0.92213 0.92980 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.22 37.16 0.27 -2.18 16 2 C -0.08 -1.66 0.36 -154.50 -0.06 -1.71 16 3 C 0.24 5.98 2.17 -27.88 -0.06 5.92 16 4 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 5 O -0.57 -14.64 12.02 -35.23 -0.42 -15.06 16 6 C -0.56 -15.01 7.30 -34.44 -0.25 -15.26 16 7 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 8 C 0.08 2.14 5.40 -17.82 -0.10 2.04 16 9 N -0.86 -25.73 12.84 55.43 0.71 -25.02 16 10 Si 0.88 21.27 29.54 -169.99 -5.02 16.24 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C -0.10 -1.82 4.48 -26.73 -0.12 -1.94 16 15 C -0.12 -1.86 5.65 -26.73 -0.15 -2.01 16 16 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 17 C -0.12 -1.78 5.65 -26.73 -0.15 -1.93 16 18 C -0.10 -1.88 4.59 -26.73 -0.12 -2.00 16 19 H 0.04 0.65 4.81 -51.93 -0.25 0.40 16 20 H 0.06 1.20 6.62 -51.93 -0.34 0.86 16 21 H 0.04 0.80 6.78 -51.93 -0.35 0.44 16 22 H 0.34 7.99 7.33 45.56 0.33 8.32 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.89 6.43 -51.93 -0.33 0.56 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.87 6.43 -51.93 -0.33 0.54 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 248.11 15.07 3.74 3.74 Total: -1.00 -29.14 248.11 -6.30 -35.45 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.41 Total: 5.51 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.90 Total: -20.87 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.71 Total: -25.02 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.42 Total: -15.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.14 -6.30 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.698 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds