Wall clock time and date at job start Mon Mar 30 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47031 * 300.00435 * 3 2 1 6 6 C 1.50701 * 109.46958 * 60.00407 * 3 2 1 7 7 H 1.08006 * 120.00174 * 359.97438 * 6 3 2 8 8 C 1.37876 * 120.00174 * 179.97438 * 6 3 2 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 3 10 10 Si 1.86792 * 120.00252 * 179.97438 * 8 6 3 11 11 H 1.48503 * 109.47178 * 60.00183 * 10 8 6 12 12 H 1.48503 * 109.47158 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47206 * 300.00466 * 10 8 6 14 14 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 15 15 C 1.52997 * 109.47317 * 60.00177 * 14 2 1 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 2 17 17 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 18 18 C 1.52997 * 109.46817 * 60.00194 * 17 16 15 19 19 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 21 21 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 22 22 H 0.96698 * 114.00510 * 59.99842 * 5 3 2 23 23 H 0.97000 * 119.99425 * 179.97438 * 9 8 6 24 24 H 1.08996 * 109.46929 * 299.99280 * 14 2 1 25 25 H 1.09002 * 109.46716 * 180.02562 * 14 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 15 14 2 27 27 H 1.09001 * 109.46832 * 179.97438 * 15 14 2 28 28 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 29 29 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 30 30 H 1.08993 * 109.47662 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47075 * 300.00932 * 17 16 15 32 32 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 33 33 H 1.09001 * 109.47289 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0005 5 8 1.5636 2.1162 -1.1667 6 6 1.5377 2.1529 1.2305 7 1 0.9165 1.6281 1.9413 8 6 1.8711 3.4727 1.4491 9 7 2.6272 4.1119 0.5833 10 14 1.2480 4.3534 2.9739 11 1 1.7420 3.6531 4.1867 12 1 1.7430 5.7535 2.9740 13 1 -0.2371 4.3539 2.9731 14 6 2.0400 -0.7213 1.2492 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -2.8850 -0.0002 17 6 1.5301 -2.1637 -1.2494 18 6 2.0400 -0.7212 -1.2493 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 0.5996 2.1543 -1.2329 23 1 2.8614 5.0406 0.7369 24 1 1.6768 -0.2075 2.1391 25 1 3.1300 -0.7209 1.2494 26 1 0.4401 -2.1639 1.2491 27 1 1.8938 -2.6778 2.1389 28 1 3.1301 -2.8849 -0.0002 29 1 1.6764 -3.9125 -0.0004 30 1 1.8930 -2.6777 -2.1394 31 1 0.4401 -2.1637 -1.2493 32 1 3.1300 -0.7212 -1.2494 33 1 1.6763 -0.2072 -2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306654168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:18 Heat of formation + Delta-G solvation = -102.085756 kcal Electronic energy + Delta-G solvation = -13675.282631 eV Core-core repulsion = 11505.787803 eV Total energy + Delta-G solvation = -2169.494828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.50469 -36.97977 -34.21919 -32.77273 -31.52504 -28.45084 -27.63413 -24.76104 -23.28247 -21.59928 -19.13304 -18.86038 -16.95942 -16.64310 -15.76492 -15.53458 -15.35606 -14.84383 -14.36434 -13.74303 -13.56867 -13.32811 -12.96711 -12.76933 -12.66923 -12.55466 -12.28137 -11.98704 -11.80290 -11.75076 -11.40548 -11.02480 -10.86144 -10.66232 -10.42355 -9.79728 -8.06963 -6.29095 1.40249 1.41415 1.49075 2.41606 3.18437 3.93948 3.96771 4.05112 4.33040 4.42573 4.55932 4.63746 4.66558 4.74212 4.79302 4.92088 4.99228 5.15437 5.24990 5.26862 5.29296 5.39516 5.42427 5.54357 5.56719 5.61193 5.71713 5.84605 5.96776 6.22254 6.81932 7.40301 7.61331 8.97525 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050290 B = 0.011459 C = 0.010324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.632745 B = 2442.997400 C = 2711.463081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.078 4.078 3 C 0.237 3.763 4 H 0.005 0.995 5 O -0.583 6.583 6 C -0.561 4.561 7 H 0.065 0.935 8 C 0.019 3.981 9 N -0.907 5.907 10 Si 0.952 3.048 11 H -0.269 1.269 12 H -0.289 1.289 13 H -0.267 1.267 14 C -0.097 4.097 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.102 4.102 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.353 0.647 23 H 0.257 0.743 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 -12.033 0.029 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 C 0.180 3.820 4 H 0.023 0.977 5 O -0.387 6.387 6 C -0.599 4.599 7 H 0.083 0.917 8 C -0.182 4.182 9 N -0.546 5.546 10 Si 0.777 3.223 11 H -0.195 1.195 12 H -0.215 1.215 13 H -0.192 1.192 14 C -0.135 4.135 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.140 4.140 19 H 0.089 0.911 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.198 0.802 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.533 -11.814 -0.125 12.332 hybrid contribution -0.358 1.093 0.830 1.419 sum -3.891 -10.721 0.705 11.427 Atomic orbital electron populations 1.21778 0.94329 1.01248 1.00983 1.21032 0.96437 0.95432 0.94921 1.19270 0.92136 0.87408 0.83214 0.97727 1.86483 1.24525 1.81341 1.46375 1.22042 1.32721 0.96843 1.08324 0.91665 1.25921 0.94709 0.98848 0.98747 1.70233 1.36900 1.10643 1.36780 0.85732 0.79049 0.77310 0.80200 1.19454 1.21515 1.19187 1.21389 0.98911 0.95803 0.97358 1.21576 1.01094 0.94301 0.98232 1.21519 1.00312 0.99129 0.94202 1.21555 1.01152 0.94163 0.98174 1.21471 0.98943 0.96238 0.97319 0.91075 0.93622 0.93619 0.80209 0.93402 0.93092 0.94521 0.91264 0.91536 0.92882 0.90243 0.91395 0.91145 0.94549 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.22 71.98 0.52 -3.90 16 2 C -0.08 -3.06 0.36 -52.18 -0.02 -3.08 16 3 C 0.24 12.22 2.17 29.85 0.06 12.28 16 4 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 5 O -0.58 -30.96 12.02 -148.98 -1.79 -32.75 16 6 C -0.56 -30.53 7.30 25.60 0.19 -30.34 16 7 H 0.07 3.40 5.68 -2.91 -0.02 3.38 16 8 C 0.02 1.06 5.40 84.65 0.46 1.52 16 9 N -0.91 -55.65 12.84 21.45 0.28 -55.37 16 10 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 C -0.10 -3.56 4.48 30.59 0.14 -3.42 16 15 C -0.11 -3.15 5.65 30.59 0.17 -2.97 16 16 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 17 C -0.11 -2.99 5.65 30.59 0.17 -2.82 16 18 C -0.10 -3.61 4.59 30.60 0.14 -3.46 16 19 H 0.07 2.05 4.81 -2.39 -0.01 2.04 16 20 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 21 H 0.04 1.56 6.78 -2.39 -0.02 1.55 16 22 H 0.35 16.71 7.33 -74.06 -0.54 16.16 16 23 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.79 6.43 -2.39 -0.02 1.77 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.74 6.43 -2.39 -0.02 1.73 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.87 7.68 -2.39 -0.02 1.85 16 Total: -1.00 -63.54 248.11 3.07 -60.46 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.55 Total: 20.45 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 2.01 Total: -38.83 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.79 Total: -32.75 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.54 3.07 -60.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -63.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds