Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 O 1.42900 * 109.47190 * 64.99580 * 3 2 1 5 5 C 1.50698 * 109.47424 * 184.99704 * 3 2 1 6 6 H 1.08001 * 119.99873 * 114.97609 * 5 3 2 7 7 C 1.37872 * 120.00088 * 294.69893 * 5 3 2 8 8 N 1.31520 * 120.00073 * 0.27612 * 7 5 3 9 9 Si 1.86799 * 120.00374 * 180.27279 * 7 5 3 10 10 H 1.48502 * 109.46748 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47361 * 119.99993 * 9 7 5 12 12 H 1.48497 * 109.47340 * 240.00501 * 9 7 5 13 13 C 1.53003 * 109.47007 * 304.99721 * 3 2 1 14 14 H 1.08998 * 115.54675 * 40.94935 * 13 3 2 15 15 C 1.52996 * 117.49980 * 255.27792 * 13 3 2 16 16 C 1.53001 * 117.49912 * 186.61207 * 13 3 2 17 17 C 1.52996 * 117.50291 * 214.97831 * 16 13 3 18 18 C 1.52999 * 117.49845 * 359.97438 * 16 13 3 19 19 H 1.09001 * 109.46907 * 300.00603 * 1 2 3 20 20 H 1.09002 * 109.46474 * 60.00254 * 1 2 3 21 21 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47537 * 239.99495 * 2 1 3 23 23 H 1.09009 * 109.46849 * 119.99728 * 2 1 3 24 24 H 0.96704 * 114.00260 * 185.02890 * 4 3 2 25 25 H 0.96996 * 119.99904 * 179.97438 * 8 7 5 26 26 H 1.09003 * 117.49936 * 359.97438 * 15 13 3 27 27 H 1.09001 * 117.49834 * 145.02103 * 15 13 3 28 28 H 1.08996 * 109.46668 * 60.00312 * 17 16 13 29 29 H 1.08998 * 109.47197 * 180.02562 * 17 16 13 30 30 H 1.08999 * 109.47279 * 300.00909 * 17 16 13 31 31 H 1.09003 * 109.47131 * 55.56816 * 18 16 13 32 32 H 1.09001 * 109.47201 * 175.56671 * 18 16 13 33 33 H 1.09001 * 109.47211 * 295.56453 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.6620 2.0814 1.2210 5 6 3.5420 1.4442 -0.1238 6 1 4.0110 1.8643 -1.0013 7 6 4.3175 0.9149 0.8858 8 7 3.7464 0.4034 1.9544 9 14 6.1794 0.9239 0.7359 10 1 6.5692 1.5516 -0.5523 11 1 6.7628 1.6991 1.8601 12 1 6.6865 -0.4711 0.7807 13 6 1.4301 2.1991 -1.1817 14 1 0.3776 1.9946 -1.3779 15 6 2.3327 2.4745 -2.3859 16 6 1.9358 3.6181 -1.4488 17 6 0.9257 4.6415 -1.9716 18 6 3.0124 4.1722 -0.5135 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.8852 3.0216 1.2585 25 1 4.2920 0.0306 2.6645 26 1 3.3612 2.1171 -2.3362 27 1 1.8739 2.4518 -3.3744 28 1 0.1170 4.7551 -1.2498 29 1 1.4222 5.6011 -2.1157 30 1 0.5184 4.2971 -2.9222 31 1 3.8666 3.4952 -0.5014 32 1 3.3311 5.1529 -0.8668 33 1 2.6066 4.2633 0.4940 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306656099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -26.380027 kcal Electronic energy + Delta-G solvation = -13829.397494 eV Core-core repulsion = 11663.185513 eV Total energy + Delta-G solvation = -2166.211982 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.70491 -34.79985 -32.11354 -31.52972 -28.60663 -27.17681 -25.90425 -23.35302 -21.55241 -19.07952 -17.91475 -16.91979 -14.88718 -14.44860 -14.07633 -13.57570 -13.16316 -12.68368 -12.57284 -12.41494 -11.74261 -11.67590 -11.25965 -10.97471 -10.95206 -10.77517 -10.70464 -10.42527 -10.10511 -9.93793 -9.52052 -9.04903 -8.78364 -8.47637 -8.30030 -7.87199 -5.89551 -4.04078 3.28505 3.37996 3.39462 4.42607 4.59456 5.32299 5.49284 5.61934 5.79681 5.84936 6.14081 6.19765 6.23501 6.37098 6.39534 6.43021 6.55776 6.59034 6.71501 6.76548 6.90125 6.91345 7.04141 7.13864 7.35647 7.46174 7.74598 7.92209 8.06800 8.37932 8.90172 9.49835 9.71336 11.11036 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.016707 C = 0.012833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.219215 B = 1675.580190 C = 2181.431313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C 0.284 3.716 4 O -0.556 6.556 5 C -0.558 4.558 6 H 0.071 0.929 7 C 0.080 3.920 8 N -0.854 5.854 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.158 4.158 14 H 0.084 0.916 15 C -0.174 4.174 16 C -0.132 4.132 17 C -0.111 4.111 18 C -0.123 4.123 19 H 0.051 0.949 20 H 0.038 0.962 21 H 0.029 0.971 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.344 0.656 25 H 0.256 0.744 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 4.188 -5.155 7.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C 0.245 3.755 4 O -0.361 6.361 5 C -0.595 4.595 6 H 0.089 0.911 7 C -0.126 4.126 8 N -0.489 5.489 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.177 4.177 14 H 0.102 0.898 15 C -0.210 4.210 16 C -0.132 4.132 17 C -0.168 4.168 18 C -0.179 4.179 19 H 0.070 0.930 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.190 0.810 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.079 3.486 -4.833 6.707 hybrid contribution 1.196 0.499 -0.284 1.326 sum -1.884 3.985 -5.117 6.753 Atomic orbital electron populations 1.21885 0.99173 0.98905 1.00590 1.21312 0.91825 0.98012 1.02023 1.18080 0.91374 0.87793 0.78245 1.86529 1.84285 1.24940 1.40366 1.21892 0.91711 1.41046 1.04870 0.91141 1.24993 0.97613 0.94620 0.95352 1.70075 1.34265 1.37527 1.07080 0.86812 0.86989 0.77726 0.78050 1.19785 1.21099 1.21106 1.23519 0.97543 0.96870 0.99729 0.89834 1.23335 1.02063 1.02695 0.92955 1.21367 0.99809 0.89714 1.02294 1.21327 0.97948 0.97833 0.99667 1.21688 0.99575 0.99523 0.97106 0.92997 0.94271 0.95143 0.93652 0.89592 0.81048 0.93417 0.87214 0.91308 0.93000 0.93076 0.93503 0.88376 0.94912 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.45 37.16 0.35 -2.70 16 2 C -0.09 -2.25 5.00 -26.73 -0.13 -2.39 16 3 C 0.28 6.83 0.38 -91.77 -0.04 6.79 16 4 O -0.56 -14.18 11.61 -35.23 -0.41 -14.59 16 5 C -0.56 -14.20 5.32 -34.44 -0.18 -14.39 16 6 H 0.07 1.76 3.75 -52.49 -0.20 1.57 16 7 C 0.08 2.12 5.25 -17.82 -0.09 2.03 16 8 N -0.85 -24.09 11.08 55.43 0.61 -23.48 16 9 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 C -0.16 -3.29 4.76 -90.62 -0.43 -3.72 16 14 H 0.08 1.70 5.96 -51.93 -0.31 1.39 16 15 C -0.17 -3.36 9.14 -26.69 -0.24 -3.60 16 16 C -0.13 -2.45 2.63 -154.47 -0.41 -2.86 16 17 C -0.11 -1.72 9.85 37.16 0.37 -1.35 16 18 C -0.12 -2.33 8.29 37.16 0.31 -2.02 16 19 H 0.05 1.11 7.82 -51.93 -0.41 0.70 16 20 H 0.04 0.74 6.05 -51.93 -0.31 0.43 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.09 2.32 6.61 -51.92 -0.34 1.98 16 24 H 0.34 8.09 5.86 45.56 0.27 8.35 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.11 2.29 5.49 -51.93 -0.29 2.00 16 27 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.72 7.97 -51.93 -0.41 0.30 16 30 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 31 H 0.10 2.11 4.75 -51.93 -0.25 1.86 16 32 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 33 H 0.05 0.99 5.75 -51.93 -0.30 0.69 16 LS Contribution 250.34 15.07 3.77 3.77 Total: -1.00 -27.61 250.34 -5.74 -33.35 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.19 Total: 9.60 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -0.50 Total: -24.21 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.61 Total: -23.48 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.41 Total: -14.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.61 -5.74 -33.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306656099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.969 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds