Wall clock time and date at job start Mon Mar 30 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47427 * 2 1 4 4 O 1.42900 * 109.47190 * 64.99580 * 3 2 1 5 5 C 1.50698 * 109.47424 * 184.99704 * 3 2 1 6 6 H 1.08001 * 119.99873 * 114.97609 * 5 3 2 7 7 C 1.37872 * 120.00088 * 294.69893 * 5 3 2 8 8 N 1.31520 * 120.00073 * 0.27612 * 7 5 3 9 9 Si 1.86799 * 120.00374 * 180.27279 * 7 5 3 10 10 H 1.48502 * 109.46748 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47361 * 119.99993 * 9 7 5 12 12 H 1.48497 * 109.47340 * 240.00501 * 9 7 5 13 13 C 1.53003 * 109.47007 * 304.99721 * 3 2 1 14 14 H 1.08998 * 115.54675 * 40.94935 * 13 3 2 15 15 C 1.52996 * 117.49980 * 255.27792 * 13 3 2 16 16 C 1.53001 * 117.49912 * 186.61207 * 13 3 2 17 17 C 1.52996 * 117.50291 * 214.97831 * 16 13 3 18 18 C 1.52999 * 117.49845 * 359.97438 * 16 13 3 19 19 H 1.09001 * 109.46907 * 300.00603 * 1 2 3 20 20 H 1.09002 * 109.46474 * 60.00254 * 1 2 3 21 21 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47537 * 239.99495 * 2 1 3 23 23 H 1.09009 * 109.46849 * 119.99728 * 2 1 3 24 24 H 0.96704 * 114.00260 * 185.02890 * 4 3 2 25 25 H 0.96996 * 119.99904 * 179.97438 * 8 7 5 26 26 H 1.09003 * 117.49936 * 359.97438 * 15 13 3 27 27 H 1.09001 * 117.49834 * 145.02103 * 15 13 3 28 28 H 1.08996 * 109.46668 * 60.00312 * 17 16 13 29 29 H 1.08998 * 109.47197 * 180.02562 * 17 16 13 30 30 H 1.08999 * 109.47279 * 300.00909 * 17 16 13 31 31 H 1.09003 * 109.47131 * 55.56816 * 18 16 13 32 32 H 1.09001 * 109.47201 * 175.56671 * 18 16 13 33 33 H 1.09001 * 109.47211 * 295.56453 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 1.6620 2.0814 1.2210 5 6 3.5420 1.4442 -0.1238 6 1 4.0110 1.8643 -1.0013 7 6 4.3175 0.9149 0.8858 8 7 3.7464 0.4034 1.9544 9 14 6.1794 0.9239 0.7359 10 1 6.5692 1.5516 -0.5523 11 1 6.7628 1.6991 1.8601 12 1 6.6865 -0.4711 0.7807 13 6 1.4301 2.1991 -1.1817 14 1 0.3776 1.9946 -1.3779 15 6 2.3327 2.4745 -2.3859 16 6 1.9358 3.6181 -1.4488 17 6 0.9257 4.6415 -1.9716 18 6 3.0124 4.1722 -0.5135 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.8852 3.0216 1.2585 25 1 4.2920 0.0306 2.6645 26 1 3.3612 2.1171 -2.3362 27 1 1.8739 2.4518 -3.3744 28 1 0.1170 4.7551 -1.2498 29 1 1.4222 5.6011 -2.1157 30 1 0.5184 4.2971 -2.9222 31 1 3.8666 3.4952 -0.5014 32 1 3.3311 5.1529 -0.8668 33 1 2.6066 4.2633 0.4940 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306656099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:24 Heat of formation + Delta-G solvation = -43.190527 kcal Electronic energy + Delta-G solvation = -13830.126452 eV Core-core repulsion = 11663.185513 eV Total energy + Delta-G solvation = -2166.940940 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.36780 -36.56063 -34.13267 -33.38433 -30.09737 -28.82654 -27.54108 -25.18879 -23.26449 -20.81043 -19.55779 -18.83420 -16.76268 -16.34416 -15.68460 -15.32225 -14.71386 -14.39782 -14.23244 -13.90366 -13.54914 -13.18859 -12.91158 -12.71086 -12.67794 -12.49763 -12.35167 -12.13433 -11.94345 -11.67848 -11.35666 -10.73335 -10.45807 -10.42709 -9.98414 -9.77939 -7.92148 -6.09868 1.39662 1.44372 1.51928 2.46671 3.05711 3.30278 4.01825 4.15389 4.19670 4.44353 4.46072 4.62749 4.71479 4.81915 4.91813 4.93516 5.02189 5.13783 5.16587 5.23460 5.33009 5.36169 5.43586 5.50580 5.57536 5.76071 5.90926 5.95738 6.15546 6.41290 6.91884 7.51049 7.77406 9.07792 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.016707 C = 0.012833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.219215 B = 1675.580190 C = 2181.431313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C 0.276 3.724 4 O -0.574 6.574 5 C -0.551 4.551 6 H 0.075 0.925 7 C 0.030 3.970 8 N -0.890 5.890 9 Si 0.933 3.067 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.289 1.289 13 C -0.175 4.175 14 H 0.092 0.908 15 C -0.169 4.169 16 C -0.121 4.121 17 C -0.106 4.106 18 C -0.122 4.122 19 H 0.038 0.962 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.348 0.652 25 H 0.251 0.749 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 5.417 -6.817 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.135 4.135 3 C 0.237 3.763 4 O -0.380 6.380 5 C -0.589 4.589 6 H 0.093 0.907 7 C -0.171 4.171 8 N -0.528 5.528 9 Si 0.760 3.240 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.215 1.215 13 C -0.193 4.193 14 H 0.110 0.890 15 C -0.206 4.206 16 C -0.121 4.121 17 C -0.163 4.163 18 C -0.178 4.178 19 H 0.057 0.943 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.195 0.805 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.536 4.725 -6.515 8.791 hybrid contribution 1.336 0.129 0.211 1.358 sum -2.200 4.854 -6.304 8.255 Atomic orbital electron populations 1.21745 0.96452 1.00321 1.00836 1.21251 0.94329 0.97852 1.00019 1.18151 0.90899 0.88182 0.79083 1.86505 1.84369 1.25481 1.41634 1.22239 0.92912 1.39308 1.04415 0.90720 1.25647 1.01206 0.94885 0.95392 1.70227 1.35342 1.39296 1.07928 0.85919 0.82767 0.77253 0.78082 1.18791 1.21387 1.21525 1.23296 0.97943 0.98831 0.99252 0.89001 1.23315 1.00750 1.02763 0.93765 1.21520 0.99779 0.89541 1.01253 1.21321 0.97214 0.97539 1.00257 1.21611 0.98721 1.00275 0.97239 0.94267 0.92330 0.93209 0.93884 0.93301 0.80531 0.93978 0.89183 0.88686 0.92597 0.91299 0.92095 0.91172 0.92283 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.45 71.98 0.68 -4.77 16 2 C -0.10 -4.65 5.00 30.59 0.15 -4.50 16 3 C 0.28 13.20 0.38 -11.54 0.00 13.19 16 4 O -0.57 -29.51 11.61 -148.98 -1.73 -31.24 16 5 C -0.55 -28.12 5.32 25.60 0.14 -27.98 16 6 H 0.08 3.71 3.75 -2.91 -0.01 3.70 16 7 C 0.03 1.62 5.25 84.65 0.44 2.07 16 8 N -0.89 -51.57 11.08 21.45 0.24 -51.34 16 9 Si 0.93 42.84 29.54 68.60 2.03 44.86 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 C -0.17 -6.95 4.76 -10.79 -0.05 -7.00 16 14 H 0.09 3.49 5.96 -2.39 -0.01 3.48 16 15 C -0.17 -6.11 9.14 30.62 0.28 -5.83 16 16 C -0.12 -4.17 2.63 -52.15 -0.14 -4.31 16 17 C -0.11 -2.87 9.85 71.98 0.71 -2.16 16 18 C -0.12 -4.42 8.29 71.98 0.60 -3.82 16 19 H 0.04 1.64 7.82 -2.39 -0.02 1.62 16 20 H 0.06 2.09 6.05 -2.39 -0.01 2.08 16 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.05 2.71 6.61 -2.38 -0.02 2.69 16 24 H 0.35 16.49 5.86 -74.05 -0.43 16.05 16 25 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.09 3.62 5.49 -2.39 -0.01 3.61 16 27 H 0.09 2.92 8.05 -2.39 -0.02 2.91 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.63 7.97 -2.39 -0.02 1.61 16 30 H 0.06 1.49 7.90 -2.39 -0.02 1.47 16 31 H 0.07 2.95 4.75 -2.39 -0.01 2.94 16 32 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 33 H 0.04 1.68 5.75 -2.39 -0.01 1.67 16 Total: -1.00 -58.76 250.34 4.01 -54.74 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.67 Total: 28.10 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 2.81 Total: -45.13 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.24 Total: -51.34 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.73 Total: -31.24 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -58.76 4.01 -54.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306656099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.554 kcal (2) G-P(sol) polarization free energy of solvation -58.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds