Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47250 * 2 1 4 4 O 1.42897 * 109.46990 * 59.87388 * 3 2 1 5 5 C 1.50697 * 109.46578 * 299.87589 * 3 2 1 6 6 H 1.08003 * 120.00032 * 118.77105 * 5 3 2 7 7 C 1.37879 * 120.00378 * 298.75861 * 5 3 2 8 8 N 1.31517 * 119.99921 * 359.54006 * 7 5 3 9 9 Si 1.86802 * 120.00386 * 179.53057 * 7 5 3 10 10 H 1.48496 * 109.47126 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.46938 * 300.00752 * 9 7 5 12 12 H 1.48500 * 109.46912 * 60.00686 * 9 7 5 13 13 C 1.52997 * 109.46886 * 179.87687 * 3 2 1 14 14 H 1.09000 * 115.55154 * 92.35351 * 13 3 2 15 15 C 1.52997 * 117.50251 * 306.67932 * 13 3 2 16 16 C 1.52998 * 60.00121 * 252.51612 * 15 13 3 17 17 C 1.53011 * 117.49711 * 252.51034 * 16 15 13 18 18 C 1.52998 * 117.50234 * 107.48892 * 16 15 13 19 19 H 1.08994 * 109.47741 * 305.06799 * 1 2 3 20 20 H 1.09005 * 109.46960 * 65.06617 * 1 2 3 21 21 H 1.08999 * 109.47249 * 185.05675 * 1 2 3 22 22 H 1.08995 * 109.47229 * 239.99713 * 2 1 3 23 23 H 1.09003 * 109.46729 * 119.99434 * 2 1 3 24 24 H 0.96703 * 113.99835 * 200.88446 * 4 3 2 25 25 H 0.97004 * 119.99658 * 355.51431 * 8 7 5 26 26 H 1.09008 * 117.49458 * 0.02562 * 15 13 3 27 27 H 1.08991 * 117.50063 * 145.00189 * 15 13 3 28 28 H 1.08993 * 109.47071 * 128.61801 * 17 16 15 29 29 H 1.09002 * 109.46789 * 248.62109 * 17 16 15 30 30 H 1.09005 * 109.46629 * 8.61868 * 17 16 15 31 31 H 1.09004 * 109.46965 * 346.90531 * 18 16 15 32 32 H 1.09002 * 109.46999 * 106.90185 * 18 16 15 33 33 H 1.08999 * 109.47278 * 226.90353 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5613 2.1170 1.1653 5 6 1.5402 2.1519 -1.2320 6 1 0.9028 3.0184 -1.1350 7 6 1.8967 1.6950 -2.4831 8 7 2.6805 0.6455 -2.6012 9 14 1.2665 2.5665 -4.0104 10 1 1.7898 1.8842 -5.2211 11 1 -0.2179 2.5293 -4.0244 12 1 1.7262 3.9785 -3.9998 13 6 3.5700 1.4424 0.0031 14 1 4.0421 1.4821 -0.9785 15 6 4.2743 0.6325 1.0935 16 6 4.2741 2.1612 1.1557 17 6 5.5873 2.8812 0.8423 18 6 3.3943 2.8250 2.2169 19 1 -0.3634 0.5904 0.8410 20 1 -0.3633 0.4333 -0.9319 21 1 -0.3634 -1.0236 0.0906 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.5623 3.0811 1.0900 25 1 3.0602 0.2324 -1.8099 26 1 3.6475 0.0994 1.8084 27 1 5.2096 0.1394 0.8292 28 1 5.4100 3.6491 0.0894 29 1 5.9732 3.3447 1.7502 30 1 6.3143 2.1625 0.4640 31 1 2.7086 2.0873 2.6337 32 1 4.0235 3.2259 3.0116 33 1 2.8241 3.6347 1.7616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306656100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -20.285074 kcal Electronic energy + Delta-G solvation = -13874.012035 eV Core-core repulsion = 11708.064351 eV Total energy + Delta-G solvation = -2165.947685 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93270 -35.05023 -33.39448 -30.88092 -28.66582 -26.77994 -25.80614 -23.73529 -21.38712 -18.90627 -18.48899 -17.56338 -14.85428 -14.47916 -13.90661 -13.71443 -13.50994 -12.86552 -12.76706 -12.51879 -12.01946 -11.63214 -11.26953 -11.16359 -10.90417 -10.78214 -10.57498 -10.23288 -10.11951 -10.03577 -9.79673 -9.24957 -8.89112 -8.53673 -8.19369 -7.92590 -6.31206 -4.14650 3.40608 3.41264 3.59992 4.48047 4.60049 5.28410 5.50503 5.58891 5.67117 5.84078 5.88111 6.19073 6.26309 6.32780 6.38846 6.42730 6.49789 6.55723 6.64103 6.74554 6.79465 6.97327 7.09836 7.21745 7.27863 7.32103 7.45823 7.61010 8.01552 8.28743 8.78569 8.97167 9.60412 10.97463 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032977 B = 0.015284 C = 0.012935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.870838 B = 1831.574535 C = 2164.076932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.266 3.734 4 O -0.575 6.575 5 C -0.614 4.614 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.913 5.913 9 Si 1.061 2.939 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.289 1.289 13 C -0.138 4.138 14 H 0.109 0.891 15 C -0.187 4.187 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.095 4.095 19 H 0.045 0.955 20 H 0.058 0.942 21 H 0.023 0.977 22 H 0.077 0.923 23 H 0.028 0.972 24 H 0.364 0.636 25 H 0.282 0.718 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.020 0.980 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 2.345 4.958 5.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.226 3.774 4 O -0.384 6.384 5 C -0.652 4.652 6 H 0.072 0.928 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.890 3.110 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.157 4.157 14 H 0.127 0.873 15 C -0.224 4.224 16 C -0.134 4.134 17 C -0.167 4.167 18 C -0.152 4.152 19 H 0.064 0.936 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.096 0.904 23 H 0.047 0.953 24 H 0.213 0.787 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.039 0.961 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.395 1.657 3.501 4.117 hybrid contribution 0.220 0.580 1.320 1.459 sum 1.616 2.237 4.821 5.555 Atomic orbital electron populations 1.21474 0.96783 0.98085 1.01940 1.21609 0.95714 0.97442 0.99974 1.18431 0.85669 0.89833 0.83468 1.86490 1.88730 1.22774 1.40401 1.22414 1.34069 1.16205 0.92483 0.92835 1.25614 0.95157 0.95828 1.00969 1.70829 1.29937 1.19476 1.34851 0.83655 0.76025 0.75418 0.75920 1.20773 1.21455 1.21513 1.23645 0.98359 1.00544 0.93107 0.87268 1.23127 1.01769 0.92915 1.04553 1.21450 0.97599 0.93124 1.01240 1.21302 0.95279 0.99685 1.00419 1.21570 0.97235 1.00695 0.95679 0.93620 0.92262 0.95783 0.90445 0.95279 0.78698 0.90347 0.89769 0.90725 0.92717 0.93270 0.93342 0.89820 0.96110 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.49 37.16 0.35 -2.45 16 2 C -0.11 -2.61 4.69 -26.73 -0.13 -2.73 16 3 C 0.27 6.38 0.70 -91.77 -0.06 6.31 16 4 O -0.58 -12.68 8.18 -35.23 -0.29 -12.97 16 5 C -0.61 -16.21 6.95 -34.44 -0.24 -16.45 16 6 H 0.05 1.42 7.78 -52.48 -0.41 1.02 16 7 C 0.03 0.79 5.00 -17.82 -0.09 0.70 16 8 N -0.91 -25.82 12.16 55.43 0.67 -25.14 16 9 Si 1.06 24.32 29.90 -169.99 -5.08 19.23 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 C -0.14 -3.16 3.81 -90.62 -0.34 -3.50 16 14 H 0.11 2.82 6.17 -51.93 -0.32 2.50 16 15 C -0.19 -3.77 8.98 -26.73 -0.24 -4.01 16 16 C -0.13 -2.62 2.70 -154.50 -0.42 -3.04 16 17 C -0.11 -1.89 9.85 37.16 0.37 -1.52 16 18 C -0.10 -1.71 7.83 37.16 0.29 -1.42 16 19 H 0.04 0.99 7.53 -51.93 -0.39 0.60 16 20 H 0.06 1.41 7.41 -51.93 -0.38 1.03 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.08 2.00 5.48 -51.93 -0.28 1.72 16 23 H 0.03 0.65 6.90 -51.93 -0.36 0.30 16 24 H 0.36 7.40 6.34 45.56 0.29 7.69 16 25 H 0.28 7.84 3.90 -40.82 -0.16 7.68 16 26 H 0.08 1.70 7.12 -51.92 -0.37 1.33 16 27 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.74 7.98 -51.93 -0.41 0.32 16 30 H 0.05 0.80 7.90 -51.93 -0.41 0.39 16 31 H 0.08 1.59 6.14 -51.93 -0.32 1.28 16 32 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 33 H 0.05 0.90 5.98 -51.93 -0.31 0.59 16 LS Contribution 250.49 15.07 3.77 3.77 Total: -1.00 -27.65 250.49 -5.75 -33.39 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.32 Total: 9.81 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -0.51 Total: -28.10 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.67 Total: -25.14 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.29 Total: -12.97 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.65 -5.75 -33.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306656100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.110 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds