Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47250 * 2 1 4 4 O 1.42897 * 109.46990 * 59.87388 * 3 2 1 5 5 C 1.50697 * 109.46578 * 299.87589 * 3 2 1 6 6 H 1.08003 * 120.00032 * 118.77105 * 5 3 2 7 7 C 1.37879 * 120.00378 * 298.75861 * 5 3 2 8 8 N 1.31517 * 119.99921 * 359.54006 * 7 5 3 9 9 Si 1.86802 * 120.00386 * 179.53057 * 7 5 3 10 10 H 1.48496 * 109.47126 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.46938 * 300.00752 * 9 7 5 12 12 H 1.48500 * 109.46912 * 60.00686 * 9 7 5 13 13 C 1.52997 * 109.46886 * 179.87687 * 3 2 1 14 14 H 1.09000 * 115.55154 * 92.35351 * 13 3 2 15 15 C 1.52997 * 117.50251 * 306.67932 * 13 3 2 16 16 C 1.52998 * 60.00121 * 252.51612 * 15 13 3 17 17 C 1.53011 * 117.49711 * 252.51034 * 16 15 13 18 18 C 1.52998 * 117.50234 * 107.48892 * 16 15 13 19 19 H 1.08994 * 109.47741 * 305.06799 * 1 2 3 20 20 H 1.09005 * 109.46960 * 65.06617 * 1 2 3 21 21 H 1.08999 * 109.47249 * 185.05675 * 1 2 3 22 22 H 1.08995 * 109.47229 * 239.99713 * 2 1 3 23 23 H 1.09003 * 109.46729 * 119.99434 * 2 1 3 24 24 H 0.96703 * 113.99835 * 200.88446 * 4 3 2 25 25 H 0.97004 * 119.99658 * 355.51431 * 8 7 5 26 26 H 1.09008 * 117.49458 * 0.02562 * 15 13 3 27 27 H 1.08991 * 117.50063 * 145.00189 * 15 13 3 28 28 H 1.08993 * 109.47071 * 128.61801 * 17 16 15 29 29 H 1.09002 * 109.46789 * 248.62109 * 17 16 15 30 30 H 1.09005 * 109.46629 * 8.61868 * 17 16 15 31 31 H 1.09004 * 109.46965 * 346.90531 * 18 16 15 32 32 H 1.09002 * 109.46999 * 106.90185 * 18 16 15 33 33 H 1.08999 * 109.47278 * 226.90353 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5613 2.1170 1.1653 5 6 1.5402 2.1519 -1.2320 6 1 0.9028 3.0184 -1.1350 7 6 1.8967 1.6950 -2.4831 8 7 2.6805 0.6455 -2.6012 9 14 1.2665 2.5665 -4.0104 10 1 1.7898 1.8842 -5.2211 11 1 -0.2179 2.5293 -4.0244 12 1 1.7262 3.9785 -3.9998 13 6 3.5700 1.4424 0.0031 14 1 4.0421 1.4821 -0.9785 15 6 4.2743 0.6325 1.0935 16 6 4.2741 2.1612 1.1557 17 6 5.5873 2.8812 0.8423 18 6 3.3943 2.8250 2.2169 19 1 -0.3634 0.5904 0.8410 20 1 -0.3633 0.4333 -0.9319 21 1 -0.3634 -1.0236 0.0906 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.5623 3.0811 1.0900 25 1 3.0602 0.2324 -1.8099 26 1 3.6475 0.0994 1.8084 27 1 5.2096 0.1394 0.8292 28 1 5.4100 3.6491 0.0894 29 1 5.9732 3.3447 1.7502 30 1 6.3143 2.1625 0.4640 31 1 2.7086 2.0873 2.6337 32 1 4.0235 3.2259 3.0116 33 1 2.8241 3.6347 1.7616 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306656100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -36.119076 kcal Electronic energy + Delta-G solvation = -13874.698649 eV Core-core repulsion = 11708.064351 eV Total energy + Delta-G solvation = -2166.634298 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.65381 -36.77865 -35.28291 -32.79759 -30.24212 -28.21108 -27.71107 -25.64117 -23.15895 -20.74904 -20.19679 -19.38955 -16.63838 -16.23789 -15.76612 -15.46932 -15.17822 -14.57190 -14.37114 -14.13662 -13.68578 -13.23831 -13.09329 -12.85419 -12.57037 -12.50372 -12.13846 -12.08223 -11.95674 -11.75653 -11.66435 -10.99347 -10.63645 -10.40561 -10.03059 -9.70255 -8.40895 -6.25204 1.54608 1.59859 1.78734 2.59098 2.97233 3.25844 3.84411 3.95352 4.07714 4.22671 4.35785 4.51778 4.55119 4.74244 4.82037 4.85321 4.87526 5.05702 5.11427 5.16999 5.25085 5.27814 5.37712 5.41756 5.46486 5.60921 5.69430 5.77925 6.07781 6.22126 6.69705 7.15590 7.60287 8.88539 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032977 B = 0.015284 C = 0.012935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.870838 B = 1831.574535 C = 2164.076932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.109 4.109 3 C 0.265 3.735 4 O -0.570 6.570 5 C -0.621 4.621 6 H 0.046 0.954 7 C -0.012 4.012 8 N -0.937 5.937 9 Si 1.100 2.900 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.275 1.275 13 C -0.166 4.166 14 H 0.075 0.925 15 C -0.178 4.178 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.092 4.092 19 H 0.050 0.950 20 H 0.037 0.963 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.037 0.963 24 H 0.371 0.629 25 H 0.276 0.724 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 3.145 6.013 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.147 4.147 3 C 0.225 3.775 4 O -0.380 6.380 5 C -0.659 4.659 6 H 0.064 0.936 7 C -0.213 4.213 8 N -0.577 5.577 9 Si 0.924 3.076 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.200 1.200 13 C -0.185 4.185 14 H 0.093 0.907 15 C -0.215 4.215 16 C -0.120 4.120 17 C -0.166 4.166 18 C -0.148 4.148 19 H 0.069 0.931 20 H 0.056 0.944 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.221 0.779 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.551 2.469 4.578 5.428 hybrid contribution 0.177 0.327 1.047 1.111 sum 1.727 2.796 5.625 6.515 Atomic orbital electron populations 1.21391 0.95736 0.99502 1.00910 1.21559 0.96653 0.97428 0.99103 1.18311 0.86511 0.89657 0.83029 1.86485 1.88736 1.23408 1.39378 1.22687 1.33536 1.15944 0.93737 0.93581 1.26697 0.94985 0.95889 1.03712 1.70887 1.31299 1.20679 1.34811 0.83135 0.76214 0.75181 0.73031 1.21390 1.20235 1.20012 1.23294 0.97650 1.04802 0.92772 0.90678 1.23133 1.01626 0.93840 1.02856 1.21702 0.98152 0.92949 0.99243 1.21324 0.94123 0.99486 1.01653 1.21502 0.97241 1.00310 0.95764 0.93141 0.94355 0.93461 0.92885 0.94398 0.77865 0.90953 0.89757 0.89706 0.93292 0.90409 0.93122 0.90991 0.93368 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.49 71.98 0.68 -4.50 16 2 C -0.11 -5.20 4.69 30.59 0.14 -5.06 16 3 C 0.26 12.66 0.70 -11.54 -0.01 12.65 16 4 O -0.57 -24.47 8.18 -148.98 -1.22 -25.69 16 5 C -0.62 -32.90 6.95 25.60 0.18 -32.73 16 6 H 0.05 2.45 7.78 -2.91 -0.02 2.42 16 7 C -0.01 -0.68 5.00 84.65 0.42 -0.25 16 8 N -0.94 -54.07 12.16 21.45 0.26 -53.81 16 9 Si 1.10 49.06 29.90 68.60 2.05 51.11 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 C -0.17 -7.59 3.81 -10.80 -0.04 -7.63 16 14 H 0.08 3.97 6.17 -2.39 -0.01 3.96 16 15 C -0.18 -6.96 8.98 30.59 0.27 -6.69 16 16 C -0.12 -4.47 2.70 -52.18 -0.14 -4.61 16 17 C -0.11 -3.48 9.85 71.99 0.71 -2.77 16 18 C -0.09 -3.03 7.83 71.98 0.56 -2.47 16 19 H 0.05 2.13 7.53 -2.39 -0.02 2.11 16 20 H 0.04 1.81 7.41 -2.38 -0.02 1.79 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.05 2.79 5.48 -2.39 -0.01 2.77 16 23 H 0.04 1.69 6.90 -2.39 -0.02 1.67 16 24 H 0.37 14.59 6.34 -74.06 -0.47 14.12 16 25 H 0.28 15.82 3.90 -92.70 -0.36 15.46 16 26 H 0.08 3.28 7.12 -2.38 -0.02 3.27 16 27 H 0.08 3.11 8.05 -2.39 -0.02 3.09 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 30 H 0.05 1.58 7.90 -2.38 -0.02 1.56 16 31 H 0.07 2.56 6.14 -2.39 -0.01 2.55 16 32 H 0.05 1.34 8.00 -2.39 -0.02 1.32 16 33 H 0.05 1.76 5.98 -2.39 -0.01 1.75 16 Total: -1.00 -58.25 250.49 4.90 -53.34 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.03 Total: 29.09 kcal Atomic # 6 Polarization: -56.84 SS G_CDS: 2.78 Total: -54.05 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.26 Total: -53.81 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.22 Total: -25.69 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -58.25 4.90 -53.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306656100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.222 kcal (2) G-P(sol) polarization free energy of solvation -58.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds