Wall clock time and date at job start Mon Mar 30 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.05182 * 2 1 4 4 C 1.54257 * 110.03568 * 238.58221 * 2 1 3 5 5 H 1.09007 * 110.60023 * 335.83894 * 4 2 1 6 6 O 1.42904 * 110.48976 * 98.42434 * 4 2 1 7 7 C 1.54887 * 104.19656 * 217.10595 * 4 2 1 8 8 C 1.54886 * 102.74765 * 37.93999 * 7 4 2 9 9 C 1.53874 * 110.03144 * 121.41231 * 2 1 3 10 10 C 1.52998 * 110.07227 * 359.97438 * 9 2 1 11 11 C 1.50701 * 110.03321 * 238.57326 * 9 2 1 12 12 H 1.08006 * 119.99654 * 357.76657 * 11 9 2 13 13 C 1.37875 * 120.00187 * 177.76533 * 11 9 2 14 14 N 1.31518 * 119.99822 * 9.75327 * 13 11 9 15 15 Si 1.86802 * 120.00040 * 189.75163 * 13 11 9 16 16 H 1.48504 * 109.46987 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.46937 * 299.99622 * 15 13 11 18 18 H 1.48495 * 109.47444 * 59.99886 * 15 13 11 19 19 H 1.08994 * 109.47714 * 298.58782 * 1 2 3 20 20 H 1.09003 * 109.47166 * 58.58907 * 1 2 3 21 21 H 1.09001 * 109.47335 * 178.58165 * 1 2 3 22 22 H 1.09003 * 109.47120 * 181.41614 * 3 2 1 23 23 H 1.09000 * 109.47092 * 301.40875 * 3 2 1 24 24 H 1.08996 * 109.47762 * 61.41425 * 3 2 1 25 25 H 0.96698 * 114.00045 * 176.22516 * 6 4 2 26 26 H 1.09005 * 110.75546 * 279.62681 * 7 4 2 27 27 H 1.09001 * 110.92026 * 156.33179 * 7 4 2 28 28 H 1.09005 * 110.48590 * 203.38357 * 8 7 4 29 29 H 1.08999 * 110.60002 * 80.79519 * 8 7 4 30 30 H 1.09002 * 109.47195 * 301.78531 * 10 9 2 31 31 H 1.08993 * 109.47354 * 61.78485 * 10 9 2 32 32 H 1.08998 * 109.47262 * 181.79384 * 10 9 2 33 33 H 0.96998 * 119.99826 * 1.10473 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7554 -1.2367 5 1 1.3152 -1.4659 -1.5987 6 8 2.4141 0.1647 -2.2707 7 6 3.3137 -1.5007 -0.7190 8 6 2.8874 -1.9405 0.7037 9 6 2.0571 -0.7535 1.2338 10 6 0.8868 -1.2666 2.0752 11 6 2.9275 0.1566 2.0616 12 1 3.1246 1.1650 1.7287 13 6 3.4720 -0.2980 3.2438 14 7 3.3949 -1.5733 3.5558 15 14 4.3195 0.8974 4.4024 16 1 4.8165 0.1637 5.5940 17 1 5.4628 1.5376 3.7035 18 1 3.3537 1.9411 4.8302 19 1 -0.3634 0.4917 0.9023 20 1 -0.3634 0.5356 -0.8771 21 1 -0.3634 -1.0273 -0.0254 22 1 3.1443 1.4263 -0.0254 23 1 1.6761 1.9622 -0.8771 24 1 1.7173 1.9473 0.9023 25 1 2.8064 -0.2520 -3.0501 26 1 4.1710 -0.8289 -0.6750 27 1 3.5358 -2.3677 -1.3411 28 1 3.7637 -2.1035 1.3312 29 1 2.2778 -2.8430 0.6595 30 1 0.2605 -0.4270 2.3769 31 1 0.2955 -1.9676 1.4862 32 1 1.2705 -1.7706 2.9622 33 1 2.9690 -2.1966 2.9468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306663284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:01 Heat of formation + Delta-G solvation = -75.833398 kcal Electronic energy + Delta-G solvation = -14043.270521 eV Core-core repulsion = 11874.914081 eV Total energy + Delta-G solvation = -2168.356441 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.91816 -37.03754 -34.50224 -32.86234 -30.64815 -28.94378 -25.99678 -25.61542 -24.26128 -21.42231 -19.88233 -18.19122 -17.60487 -16.13729 -15.98708 -15.49546 -15.15245 -14.78929 -14.37876 -13.95769 -13.50358 -13.04042 -12.91437 -12.69165 -12.54067 -12.34136 -12.08052 -12.01311 -11.85183 -11.74785 -11.41309 -11.02261 -10.80114 -10.65525 -10.28624 -9.93550 -8.29202 -6.06367 1.55390 1.61264 1.79415 2.65062 3.32883 3.48641 3.86172 3.91790 4.14091 4.47549 4.51870 4.63942 4.64239 4.77148 4.82912 4.91037 4.94629 5.03106 5.08116 5.22065 5.26274 5.32164 5.38044 5.45558 5.51076 5.69684 5.84494 5.95717 6.40011 6.48781 6.92595 7.03230 7.68756 9.01164 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040625 B = 0.013986 C = 0.013688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.061530 B = 2001.562202 C = 2045.144347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 C -0.090 4.090 4 C 0.115 3.885 5 H 0.069 0.931 6 O -0.571 6.571 7 C -0.139 4.139 8 C -0.117 4.117 9 C 0.051 3.949 10 C -0.132 4.132 11 C -0.592 4.592 12 H 0.060 0.940 13 C -0.026 4.026 14 N -0.947 5.947 15 Si 1.096 2.904 16 H -0.291 1.291 17 H -0.279 1.279 18 H -0.277 1.277 19 H 0.049 0.951 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.036 0.964 25 H 0.386 0.614 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 1.029 -8.901 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.053 4.053 3 C -0.147 4.147 4 C 0.057 3.943 5 H 0.087 0.913 6 O -0.378 6.378 7 C -0.177 4.177 8 C -0.155 4.155 9 C 0.051 3.949 10 C -0.190 4.190 11 C -0.630 4.630 12 H 0.078 0.922 13 C -0.225 4.225 14 N -0.588 5.588 15 Si 0.921 3.079 16 H -0.217 1.217 17 H -0.205 1.205 18 H -0.203 1.203 19 H 0.068 0.932 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.235 0.765 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.753 1.573 -7.015 7.699 hybrid contribution -0.316 -0.717 -1.410 1.613 sum -3.069 0.856 -8.425 9.007 Atomic orbital electron populations 1.21907 0.94345 1.01416 1.00962 1.21118 0.95096 0.95894 0.93229 1.21355 0.99475 0.95433 0.98440 1.22673 0.94622 0.89749 0.87279 0.91324 1.86508 1.84167 1.37403 1.29771 1.22992 0.98327 0.99673 0.96719 1.22457 0.99695 0.97774 0.95619 1.18923 0.92079 0.92236 0.91663 1.21998 0.98026 0.99046 0.99898 1.22609 1.32011 1.00579 1.07767 0.92229 1.26680 0.97265 0.99202 0.99320 1.70869 1.43371 1.03247 1.41275 0.83190 0.76046 0.73828 0.74830 1.21723 1.20494 1.20305 0.93225 0.92580 0.92278 0.94699 0.93826 0.94498 0.76504 0.92999 0.90540 0.94265 0.93827 0.94439 0.93868 0.94915 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.21 71.98 0.52 -3.97 16 2 C -0.05 -2.13 0.92 -51.46 -0.05 -2.18 16 3 C -0.09 -3.75 6.21 71.98 0.45 -3.30 16 4 C 0.12 3.97 3.61 31.67 0.11 4.09 16 5 H 0.07 2.10 7.84 -2.38 -0.02 2.08 16 6 O -0.57 -17.83 11.84 -148.98 -1.76 -19.60 16 7 C -0.14 -5.19 6.61 31.88 0.21 -4.98 16 8 C -0.12 -5.27 4.73 31.67 0.15 -5.12 16 9 C 0.05 2.40 0.61 -52.21 -0.03 2.37 16 10 C -0.13 -6.07 6.88 71.98 0.50 -5.58 16 11 C -0.59 -31.77 7.09 25.60 0.18 -31.59 16 12 H 0.06 3.22 4.69 -2.91 -0.01 3.20 16 13 C -0.03 -1.45 4.95 84.65 0.42 -1.04 16 14 N -0.95 -56.02 12.16 21.45 0.26 -55.76 16 15 Si 1.10 50.89 29.92 68.60 2.05 52.94 16 16 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H 0.05 1.79 6.69 -2.39 -0.02 1.77 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.06 1.90 6.77 -2.39 -0.02 1.88 16 22 H 0.03 1.56 7.07 -2.39 -0.02 1.55 16 23 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 24 H 0.04 1.59 7.14 -2.39 -0.02 1.58 16 25 H 0.39 8.12 9.11 -74.06 -0.67 7.44 16 26 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.04 2.04 6.11 -2.38 -0.01 2.02 16 29 H 0.04 1.83 7.81 -2.39 -0.02 1.81 16 30 H 0.04 1.68 6.63 -2.39 -0.02 1.67 16 31 H 0.04 1.72 6.79 -2.39 -0.02 1.71 16 32 H 0.03 1.68 5.57 -2.39 -0.01 1.66 16 33 H 0.27 15.85 4.18 -92.71 -0.39 15.47 16 Total: -1.00 -62.00 242.49 3.81 -58.19 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.81 Total: 15.52 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 2.46 Total: -51.30 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.26 Total: -55.76 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.76 Total: -19.60 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -62.00 3.81 -58.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306663284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.642 kcal (2) G-P(sol) polarization free energy of solvation -62.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds