Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47929 * 59.99817 * 3 2 1 5 5 C 1.53091 * 109.48648 * 180.02562 * 3 2 1 6 6 C 1.53203 * 109.15220 * 177.59331 * 5 3 2 7 7 C 1.53173 * 109.03907 * 303.02878 * 6 5 3 8 8 C 1.53086 * 109.17027 * 56.98184 * 7 6 5 9 9 H 1.09007 * 109.48921 * 62.37264 * 8 7 6 10 10 C 1.50691 * 109.48546 * 182.40549 * 8 7 6 11 11 H 1.08002 * 120.00495 * 359.94538 * 10 8 7 12 12 C 1.37881 * 120.00313 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99430 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00346 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46873 * 60.00425 * 14 12 10 16 16 H 1.48500 * 109.47138 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47267 * 300.00184 * 14 12 10 18 18 O 1.42903 * 109.48089 * 299.98072 * 3 2 1 19 19 H 1.08992 * 109.47462 * 299.99732 * 1 2 3 20 20 H 1.08998 * 109.47256 * 60.00009 * 1 2 3 21 21 H 1.09011 * 109.46952 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47456 * 240.00273 * 2 1 3 23 23 H 1.09007 * 109.47343 * 120.00161 * 2 1 3 24 24 H 1.09001 * 109.47002 * 60.00091 * 4 3 2 25 25 H 1.08993 * 109.46955 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47050 * 300.00357 * 4 3 2 27 27 H 1.08997 * 109.52280 * 297.51401 * 5 3 2 28 28 H 1.09007 * 109.51882 * 57.69682 * 5 3 2 29 29 H 1.08999 * 109.54046 * 183.16040 * 6 5 3 30 30 H 1.08997 * 109.53684 * 62.89399 * 6 5 3 31 31 H 1.09006 * 109.52794 * 297.07298 * 7 6 5 32 32 H 1.09006 * 109.57059 * 176.92149 * 7 6 5 33 33 H 0.97007 * 119.99802 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1640 1.2492 5 6 3.5709 1.4428 -0.0006 6 6 4.0732 2.8889 -0.0614 7 6 3.4909 3.5683 -1.3046 8 6 1.9631 3.4857 -1.2536 9 1 1.5987 4.0264 -0.3800 10 6 1.3845 4.0998 -2.5021 11 1 2.0401 4.5090 -3.2565 12 6 0.0180 4.1398 -2.6813 13 7 -0.7805 3.6424 -1.7622 14 14 -0.6993 4.9016 -4.2287 15 1 -0.2029 4.1651 -5.4189 16 1 -2.1813 4.8212 -4.1789 17 1 -0.2840 6.3245 -4.3183 18 8 1.5641 2.1162 -1.1670 19 1 -0.3634 0.5137 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 1.6502 2.1392 25 1 1.8931 3.1916 1.2488 26 1 0.4400 2.1640 1.2492 27 1 3.9356 0.9682 0.9102 28 1 3.9349 0.8940 -0.8693 29 1 5.1616 2.8947 -0.1188 30 1 3.7509 3.4245 0.8315 31 1 3.8532 3.0625 -2.1997 32 1 3.7986 4.6137 -1.3273 33 1 -1.7419 3.6709 -1.8880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306883021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -70.049122 kcal Electronic energy + Delta-G solvation = -13786.908351 eV Core-core repulsion = 11618.802735 eV Total energy + Delta-G solvation = -2168.105616 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80752 -33.94644 -32.60525 -31.87631 -29.20077 -27.34683 -25.37889 -23.41568 -21.71904 -20.04820 -17.99949 -16.54356 -15.06032 -14.82295 -14.28819 -14.09031 -13.35319 -12.97780 -12.69476 -12.43691 -11.90469 -11.64334 -11.18918 -11.05404 -10.91376 -10.82409 -10.56504 -10.48073 -10.30961 -10.09467 -10.01175 -9.62938 -9.29896 -8.73146 -8.37995 -7.70096 -5.94876 -4.06166 3.35377 3.39635 3.42516 4.46346 5.03139 5.39643 5.51117 5.60081 5.73483 5.83884 5.98245 6.02760 6.15220 6.27340 6.34179 6.36763 6.43279 6.52052 6.56781 6.67439 6.76654 6.78619 6.93007 7.02248 7.09331 7.15478 7.29019 7.62945 7.96195 8.37791 8.86593 9.25906 9.63201 11.12212 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.013840 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.173116 B = 2022.596624 C = 2506.472278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.108 3.892 4 C -0.169 4.169 5 C -0.138 4.138 6 C -0.121 4.121 7 C -0.145 4.145 8 C 0.218 3.782 9 H 0.018 0.982 10 C -0.528 4.528 11 H 0.061 0.939 12 C 0.079 3.921 13 N -0.858 5.858 14 Si 0.889 3.111 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 O -0.344 6.344 19 H 0.050 0.950 20 H 0.076 0.924 21 H 0.034 0.966 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -4.077 4.459 7.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.176 4.176 6 C -0.158 4.158 7 C -0.182 4.182 8 C 0.162 3.838 9 H 0.035 0.965 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.126 4.126 13 N -0.494 5.494 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 O -0.263 6.263 19 H 0.069 0.931 20 H 0.095 0.905 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.321 -4.197 4.376 7.446 hybrid contribution -0.180 0.495 -0.596 0.796 sum 4.141 -3.702 3.780 6.719 Atomic orbital electron populations 1.21686 0.95326 0.99512 1.03592 1.21407 0.96894 0.95171 1.00439 1.21192 0.90791 0.92586 0.88747 1.22381 1.02457 1.00765 0.96991 1.22158 0.97792 0.96985 1.00695 1.21647 0.98682 0.96103 0.99407 1.22264 1.00719 0.99077 0.96186 1.19672 0.86881 0.80192 0.97008 0.96460 1.20976 0.91603 1.38265 1.05657 0.92124 1.25031 0.97262 0.94278 0.96071 1.70033 1.03298 1.42900 1.33129 0.86733 0.77888 0.79711 0.84026 1.20173 1.21266 1.20248 1.88362 1.74144 1.25690 1.38086 0.93129 0.90512 0.94659 0.92364 0.92759 0.94096 0.92389 0.91506 0.92938 0.92159 0.93534 0.92524 0.92738 0.92767 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.41 37.15 0.35 -2.34 16 2 C -0.10 -1.85 5.20 -26.73 -0.14 -1.98 16 3 C 0.11 2.20 0.79 -90.57 -0.07 2.13 16 4 C -0.17 -3.31 7.58 37.16 0.28 -3.02 16 5 C -0.14 -2.51 4.92 -26.58 -0.13 -2.65 16 6 C -0.12 -2.22 5.72 -26.54 -0.15 -2.38 16 7 C -0.14 -3.15 5.36 -26.60 -0.14 -3.30 16 8 C 0.22 5.65 2.17 -27.84 -0.06 5.59 16 9 H 0.02 0.49 6.34 -51.92 -0.33 0.16 16 10 C -0.53 -14.97 8.79 -34.44 -0.30 -15.27 16 11 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 12 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 13 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 O -0.34 -8.79 8.59 -35.23 -0.30 -9.09 16 19 H 0.05 0.93 6.43 -51.93 -0.33 0.59 16 20 H 0.08 1.72 7.68 -51.93 -0.40 1.32 16 21 H 0.03 0.56 8.14 -51.92 -0.42 0.13 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.18 4.97 -51.93 -0.26 0.93 16 26 H 0.07 1.41 6.43 -51.93 -0.33 1.07 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.02 6.62 -51.93 -0.34 0.68 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 255.46 15.07 3.85 3.85 Total: -1.00 -29.20 255.46 -6.57 -35.77 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.34 Total: -1.67 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -0.46 Total: -21.06 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.71 Total: -24.27 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.30 Total: -9.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.20 -6.57 -35.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306883021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.282 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds