Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47929 * 59.99817 * 3 2 1 5 5 C 1.53091 * 109.48648 * 180.02562 * 3 2 1 6 6 C 1.53203 * 109.15220 * 177.59331 * 5 3 2 7 7 C 1.53173 * 109.03907 * 303.02878 * 6 5 3 8 8 C 1.53086 * 109.17027 * 56.98184 * 7 6 5 9 9 H 1.09007 * 109.48921 * 62.37264 * 8 7 6 10 10 C 1.50691 * 109.48546 * 182.40549 * 8 7 6 11 11 H 1.08002 * 120.00495 * 359.94538 * 10 8 7 12 12 C 1.37881 * 120.00313 * 179.97438 * 10 8 7 13 13 N 1.31517 * 119.99430 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00346 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46873 * 60.00425 * 14 12 10 16 16 H 1.48500 * 109.47138 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47267 * 300.00184 * 14 12 10 18 18 O 1.42903 * 109.48089 * 299.98072 * 3 2 1 19 19 H 1.08992 * 109.47462 * 299.99732 * 1 2 3 20 20 H 1.08998 * 109.47256 * 60.00009 * 1 2 3 21 21 H 1.09011 * 109.46952 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47456 * 240.00273 * 2 1 3 23 23 H 1.09007 * 109.47343 * 120.00161 * 2 1 3 24 24 H 1.09001 * 109.47002 * 60.00091 * 4 3 2 25 25 H 1.08993 * 109.46955 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47050 * 300.00357 * 4 3 2 27 27 H 1.08997 * 109.52280 * 297.51401 * 5 3 2 28 28 H 1.09007 * 109.51882 * 57.69682 * 5 3 2 29 29 H 1.08999 * 109.54046 * 183.16040 * 6 5 3 30 30 H 1.08997 * 109.53684 * 62.89399 * 6 5 3 31 31 H 1.09006 * 109.52794 * 297.07298 * 7 6 5 32 32 H 1.09006 * 109.57059 * 176.92149 * 7 6 5 33 33 H 0.97007 * 119.99802 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1640 1.2492 5 6 3.5709 1.4428 -0.0006 6 6 4.0732 2.8889 -0.0614 7 6 3.4909 3.5683 -1.3046 8 6 1.9631 3.4857 -1.2536 9 1 1.5987 4.0264 -0.3800 10 6 1.3845 4.0998 -2.5021 11 1 2.0401 4.5090 -3.2565 12 6 0.0180 4.1398 -2.6813 13 7 -0.7805 3.6424 -1.7622 14 14 -0.6993 4.9016 -4.2287 15 1 -0.2029 4.1651 -5.4189 16 1 -2.1813 4.8212 -4.1789 17 1 -0.2840 6.3245 -4.3183 18 8 1.5641 2.1162 -1.1670 19 1 -0.3634 0.5137 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 1.6502 2.1392 25 1 1.8931 3.1916 1.2488 26 1 0.4400 2.1640 1.2492 27 1 3.9356 0.9682 0.9102 28 1 3.9349 0.8940 -0.8693 29 1 5.1616 2.8947 -0.1188 30 1 3.7509 3.4245 0.8315 31 1 3.8532 3.0625 -2.1997 32 1 3.7986 4.6137 -1.3273 33 1 -1.7419 3.6709 -1.8880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306883021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -87.355172 kcal Electronic energy + Delta-G solvation = -13787.658797 eV Core-core repulsion = 11618.802735 eV Total energy + Delta-G solvation = -2168.856062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48746 -35.72033 -34.33749 -33.81253 -30.89186 -29.03933 -27.22875 -25.05057 -23.51445 -21.65194 -19.66188 -18.63062 -16.76854 -16.70018 -16.08507 -15.66282 -15.02647 -14.63340 -14.37936 -14.18818 -13.57585 -13.23874 -12.84196 -12.77814 -12.67676 -12.59308 -12.31194 -12.20549 -11.98889 -11.72639 -11.59954 -11.37391 -10.99458 -10.75079 -10.33848 -9.52412 -8.08950 -6.28187 1.40813 1.43368 1.50488 2.42907 3.08555 3.69389 3.93328 4.09977 4.19897 4.30423 4.46626 4.49466 4.60988 4.74499 4.81476 4.84856 4.88997 5.04724 5.06559 5.09534 5.18767 5.20740 5.32183 5.36930 5.48047 5.54515 5.66693 5.70685 5.88082 6.30772 6.73831 7.36264 7.48875 8.97350 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037266 B = 0.013840 C = 0.011168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.173116 B = 2022.596624 C = 2506.472278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.090 3.910 4 C -0.161 4.161 5 C -0.134 4.134 6 C -0.116 4.116 7 C -0.140 4.140 8 C 0.218 3.782 9 H -0.012 1.012 10 C -0.557 4.557 11 H 0.057 0.943 12 C 0.029 3.971 13 N -0.887 5.887 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.267 1.267 18 O -0.376 6.376 19 H 0.048 0.952 20 H 0.028 0.972 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.824 -4.972 5.045 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C 0.050 3.950 4 C -0.218 4.218 5 C -0.171 4.171 6 C -0.153 4.153 7 C -0.178 4.178 8 C 0.162 3.838 9 H 0.005 0.995 10 C -0.595 4.595 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.524 5.524 14 Si 0.780 3.220 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.192 1.192 18 O -0.295 6.295 19 H 0.067 0.933 20 H 0.047 0.953 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.530 -5.091 4.965 9.008 hybrid contribution -0.551 0.744 -0.731 1.179 sum 4.980 -4.347 4.234 7.850 Atomic orbital electron populations 1.21595 0.96209 1.00579 1.01121 1.21456 0.96084 0.93920 1.02182 1.21629 0.92817 0.93349 0.87184 1.22292 1.00812 1.00337 0.98347 1.22123 0.95572 0.96978 1.02443 1.21625 1.00349 0.95957 0.97411 1.22138 0.97992 0.99738 0.97930 1.19463 0.89284 0.80337 0.94678 0.99480 1.21420 0.92292 1.39114 1.06649 0.92435 1.25831 0.97650 0.94733 0.99165 1.70168 1.03338 1.43966 1.34887 0.85693 0.77133 0.79174 0.80043 1.19867 1.20749 1.19189 1.88255 1.75334 1.25228 1.40730 0.93285 0.95259 0.91760 0.92547 0.88868 0.90361 0.93946 0.94012 0.89301 0.92304 0.90408 0.92214 0.93499 0.92560 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.41 71.98 0.68 -4.39 16 2 C -0.10 -3.39 5.20 30.59 0.16 -3.23 16 3 C 0.09 3.58 0.79 -10.76 -0.01 3.57 16 4 C -0.16 -6.14 7.58 71.98 0.55 -5.59 16 5 C -0.13 -4.44 4.92 30.69 0.15 -4.28 16 6 C -0.12 -3.98 5.72 30.72 0.18 -3.81 16 7 C -0.14 -6.07 5.36 30.68 0.16 -5.90 16 8 C 0.22 11.58 2.17 29.87 0.06 11.65 16 9 H -0.01 -0.71 6.34 -2.38 -0.02 -0.72 16 10 C -0.56 -32.47 8.79 25.60 0.23 -32.25 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 12 C 0.03 1.69 5.40 84.66 0.46 2.15 16 13 N -0.89 -53.35 12.84 21.45 0.28 -53.07 16 14 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 O -0.38 -19.56 8.59 -148.98 -1.28 -20.84 16 19 H 0.05 1.78 6.43 -2.39 -0.02 1.76 16 20 H 0.03 1.33 7.68 -2.39 -0.02 1.31 16 21 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.09 2.48 8.14 -2.38 -0.02 2.47 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.04 1.72 4.97 -2.39 -0.01 1.71 16 26 H 0.04 1.77 6.43 -2.39 -0.02 1.75 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 31 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 Total: -1.00 -64.69 255.46 4.69 -59.99 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.06 Total: 9.09 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 2.61 Total: -42.08 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.28 Total: -53.07 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.28 Total: -20.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -64.69 4.69 -59.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306883021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.364 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds