Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46868 * 2 1 4 4 C 1.52998 * 109.47978 * 62.16772 * 3 2 1 5 5 C 1.53088 * 109.48861 * 182.19525 * 3 2 1 6 6 C 1.53184 * 109.16220 * 62.38062 * 5 3 2 7 7 C 1.53173 * 109.03643 * 56.98050 * 6 5 3 8 8 C 1.53087 * 109.16539 * 303.02059 * 7 6 5 9 9 H 1.09000 * 109.49137 * 297.62308 * 8 7 6 10 10 C 1.50698 * 109.48495 * 177.59030 * 8 7 6 11 11 H 1.07997 * 119.99897 * 271.48674 * 10 8 7 12 12 C 1.37873 * 119.99881 * 91.48293 * 10 8 7 13 13 N 1.31508 * 120.00300 * 2.72902 * 12 10 8 14 14 Si 1.86798 * 119.99876 * 182.72722 * 12 10 8 15 15 H 1.48498 * 109.47433 * 180.02562 * 14 12 10 16 16 H 1.48502 * 109.47547 * 60.00289 * 14 12 10 17 17 H 1.48498 * 109.47583 * 300.00125 * 14 12 10 18 18 O 1.42905 * 109.48095 * 302.14527 * 3 2 1 19 19 H 1.09004 * 109.47144 * 300.96983 * 1 2 3 20 20 H 1.08999 * 109.47338 * 60.96380 * 1 2 3 21 21 H 1.09002 * 109.47232 * 180.96771 * 1 2 3 22 22 H 1.08999 * 109.47138 * 240.00313 * 2 1 3 23 23 H 1.08993 * 109.47339 * 120.00042 * 2 1 3 24 24 H 1.09004 * 109.47109 * 299.97840 * 4 3 2 25 25 H 1.09005 * 109.47149 * 59.97609 * 4 3 2 26 26 H 1.08998 * 109.47180 * 179.97438 * 4 3 2 27 27 H 1.08999 * 109.52728 * 182.28730 * 5 3 2 28 28 H 1.09004 * 109.52434 * 302.41799 * 5 3 2 29 29 H 1.09000 * 109.54083 * 176.84974 * 6 5 3 30 30 H 1.09001 * 109.54197 * 297.02242 * 6 5 3 31 31 H 1.08994 * 109.52276 * 183.10885 * 7 6 5 32 32 H 1.09001 * 109.52111 * 62.92352 * 7 6 5 33 33 H 0.96998 * 120.00063 * 354.61673 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5751 2.1481 1.2755 5 6 3.5698 1.4435 -0.0553 6 6 4.0261 0.7894 -1.3631 7 6 3.4014 1.5413 -2.5423 8 6 1.8780 1.5367 -2.3910 9 1 1.5125 0.5103 -2.4224 10 6 1.2587 2.3254 -3.5159 11 1 1.1080 3.3896 -3.4103 12 6 0.8847 1.6884 -4.6801 13 7 1.0186 0.3846 -4.7885 14 14 0.1876 2.6772 -6.1033 15 1 -0.1347 1.7644 -7.2294 16 1 1.1899 3.6784 -6.5485 17 1 -1.0473 3.3750 -5.6635 18 8 1.5230 2.1308 -1.1407 19 1 -0.3633 0.5288 0.8812 20 1 -0.3634 0.4988 -0.8985 21 1 -0.3634 -1.0275 0.0174 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 0.4857 2.1482 1.3143 25 1 1.9695 1.6230 2.1456 26 1 1.9388 3.1756 1.2756 27 1 3.9353 2.4695 -0.0143 28 1 3.9653 0.8819 0.7911 29 1 5.1127 0.8369 -1.4348 30 1 3.7047 -0.2520 -1.3815 31 1 3.6763 1.0490 -3.4751 32 1 3.7633 2.5694 -2.5516 33 1 1.4519 -0.1189 -4.0817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306883025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -93.797272 kcal Electronic energy + Delta-G solvation = -13758.946605 eV Core-core repulsion = 11589.811192 eV Total energy + Delta-G solvation = -2169.135413 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87237 -36.04080 -34.40845 -34.11698 -31.40380 -28.73973 -26.85717 -25.05361 -23.78242 -22.41398 -19.91691 -19.08206 -17.07323 -16.45293 -15.95657 -15.69993 -15.36149 -15.01292 -14.82441 -13.75025 -13.55337 -13.43119 -13.12585 -13.01135 -12.76802 -12.65395 -12.56194 -12.06895 -11.98881 -11.94017 -11.73347 -11.61041 -11.00361 -10.71389 -10.37532 -9.89739 -8.71319 -6.43158 1.50677 1.58493 1.79290 2.50756 2.98933 3.34810 3.83649 3.89932 4.00559 4.12954 4.24602 4.36518 4.47179 4.60510 4.67496 4.75054 4.81913 4.86473 4.93551 4.96955 5.04220 5.08898 5.11143 5.23157 5.29152 5.40810 5.49244 5.56044 5.95377 6.08462 6.47699 6.96930 7.37587 8.66981 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.011924 C = 0.011088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.635445 B = 2347.658129 C = 2524.588382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.143 4.143 3 C 0.092 3.908 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.134 4.134 8 C 0.204 3.796 9 H 0.006 0.994 10 C -0.609 4.609 11 H 0.040 0.960 12 C -0.022 4.022 13 N -0.930 5.930 14 Si 1.117 2.883 15 H -0.278 1.278 16 H -0.268 1.268 17 H -0.273 1.273 18 O -0.398 6.398 19 H 0.072 0.928 20 H 0.021 0.979 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.044 0.956 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 0.074 10.243 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.052 3.948 4 C -0.188 4.188 5 C -0.170 4.170 6 C -0.158 4.158 7 C -0.173 4.173 8 C 0.147 3.853 9 H 0.023 0.977 10 C -0.646 4.646 11 H 0.059 0.941 12 C -0.221 4.221 13 N -0.567 5.567 14 Si 0.938 3.062 15 H -0.203 1.203 16 H -0.193 1.193 17 H -0.198 1.198 18 O -0.318 6.318 19 H 0.091 0.909 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.113 0.887 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.575 0.097 8.766 9.137 hybrid contribution 0.810 -0.181 1.125 1.398 sum 3.385 -0.083 9.890 10.454 Atomic orbital electron populations 1.21657 0.95808 1.01190 1.01267 1.22091 0.96745 0.97117 1.02138 1.21778 0.92941 0.92133 0.87903 1.21774 1.01788 1.00527 0.94672 1.22116 0.95541 1.01392 0.97902 1.21684 1.00391 0.98976 0.94737 1.22127 0.98640 0.99124 0.97367 1.19689 0.90918 0.93045 0.81636 0.97678 1.22162 1.45513 0.96039 1.00919 0.94116 1.27328 0.95000 0.96940 1.02784 1.70916 1.42045 1.07046 1.36717 0.82950 0.76716 0.74007 0.72560 1.20291 1.19322 1.19834 1.87969 1.75246 1.54280 1.14319 0.90933 0.96020 0.92213 0.93940 0.88712 0.92381 0.88597 0.92588 0.91936 0.88551 0.90664 0.92482 0.94605 0.93688 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.45 71.98 0.68 -4.29 16 2 C -0.14 -4.91 4.27 30.60 0.13 -4.78 16 3 C 0.09 3.33 0.79 -10.76 -0.01 3.32 16 4 C -0.13 -3.76 8.54 71.98 0.61 -3.14 16 5 C -0.13 -4.23 4.92 30.69 0.15 -4.08 16 6 C -0.12 -4.38 5.72 30.71 0.18 -4.20 16 7 C -0.13 -6.35 5.40 30.68 0.17 -6.18 16 8 C 0.20 10.92 2.13 29.88 0.06 10.98 16 9 H 0.01 0.32 4.67 -2.39 -0.01 0.31 16 10 C -0.61 -36.49 8.69 25.60 0.22 -36.26 16 11 H 0.04 2.49 7.81 -2.91 -0.02 2.46 16 12 C -0.02 -1.31 5.46 84.65 0.46 -0.85 16 13 N -0.93 -57.42 13.61 21.44 0.29 -57.13 16 14 Si 1.12 51.45 29.90 68.60 2.05 53.51 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 O -0.40 -19.56 9.12 -148.98 -1.36 -20.92 16 19 H 0.07 2.17 6.43 -2.39 -0.02 2.16 16 20 H 0.02 0.93 7.60 -2.39 -0.02 0.91 16 21 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.04 1.67 4.99 -2.39 -0.01 1.66 16 23 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.06 1.71 6.46 -2.38 -0.02 1.69 16 25 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.07 6.57 -2.39 -0.02 2.05 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.26 16.05 6.56 -92.71 -0.61 15.44 16 Total: -1.00 -67.50 253.71 4.87 -62.63 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.23 Total: 11.40 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 2.66 Total: -49.49 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.29 Total: -57.13 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.36 Total: -20.92 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.51 kcal Total: -67.50 4.87 -62.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306883025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.166 kcal (2) G-P(sol) polarization free energy of solvation -67.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds