Wall clock time and date at job start Mon Mar 30 2020 01:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.05534 * 2 1 4 4 C 1.54260 * 110.03707 * 121.41788 * 2 1 3 5 5 H 1.09003 * 110.59946 * 24.15938 * 4 2 1 6 6 O 1.42903 * 110.48850 * 261.57822 * 4 2 1 7 7 C 1.54888 * 104.20079 * 142.89515 * 4 2 1 8 8 C 1.54888 * 102.74656 * 322.06182 * 7 4 2 9 9 C 1.53877 * 110.03405 * 238.58799 * 2 1 3 10 10 C 1.53003 * 110.03405 * 121.42719 * 9 2 1 11 11 C 1.50700 * 110.07176 * 0.02562 * 9 2 1 12 12 H 1.08007 * 120.00067 * 1.36091 * 11 9 2 13 13 C 1.37879 * 119.99957 * 181.35540 * 11 9 2 14 14 N 1.31512 * 119.99758 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99870 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47425 * 60.00493 * 15 13 11 17 17 H 1.48505 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47209 * 300.00458 * 15 13 11 19 19 H 1.09001 * 109.47116 * 300.03222 * 1 2 3 20 20 H 1.09000 * 109.47172 * 60.03471 * 1 2 3 21 21 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47641 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47218 * 299.96549 * 3 2 1 24 24 H 1.09001 * 109.47224 * 59.96374 * 3 2 1 25 25 H 0.96700 * 114.00311 * 183.76970 * 6 4 2 26 26 H 1.09004 * 110.75580 * 80.37395 * 7 4 2 27 27 H 1.08998 * 110.75523 * 203.74267 * 7 4 2 28 28 H 1.08997 * 110.48601 * 156.61937 * 8 7 4 29 29 H 1.09001 * 110.48032 * 279.26115 * 8 7 4 30 30 H 1.08998 * 109.46682 * 178.61955 * 10 9 2 31 31 H 1.08997 * 109.46982 * 298.62245 * 10 9 2 32 32 H 1.09000 * 109.46909 * 58.62427 * 10 9 2 33 33 H 0.97001 * 119.99825 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7554 1.2368 5 1 1.3153 -1.4659 1.5987 6 8 2.4141 0.1647 2.2707 7 6 3.3138 -1.5007 0.7190 8 6 2.8876 -1.9405 -0.7036 9 6 2.0571 -0.7535 -1.2338 10 6 2.9409 0.1705 -2.0742 11 6 0.9045 -1.2589 -2.0626 12 1 -0.1109 -1.0482 -1.7609 13 6 1.1462 -1.9902 -3.2062 14 7 2.3827 -2.2471 -3.5733 15 14 -0.2825 -2.6161 -4.2340 16 1 -1.0924 -1.4654 -4.7086 17 1 0.2405 -3.3692 -5.4022 18 1 -1.1316 -3.5118 -3.4080 19 1 -0.3633 0.5143 0.8897 20 1 -0.3633 0.5133 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 3.1446 1.4263 0.0005 23 1 1.6971 1.9546 -0.8903 24 1 1.6961 1.9550 0.8897 25 1 2.8064 -0.2519 3.0502 26 1 4.1711 -0.8290 0.6751 27 1 3.5326 -2.3678 1.3422 28 1 3.7638 -2.1035 -1.3310 29 1 2.2773 -2.8425 -0.6571 30 1 3.3288 -0.3791 -2.9318 31 1 2.3517 1.0189 -2.4224 32 1 3.7717 0.5298 -1.4669 33 1 2.5527 -2.7620 -4.3777 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307251493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:03 Heat of formation + Delta-G solvation = -60.166617 kcal Electronic energy + Delta-G solvation = -13968.307504 eV Core-core repulsion = 11800.630426 eV Total energy + Delta-G solvation = -2167.677078 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.05375 -35.28751 -32.33323 -31.17465 -28.86211 -27.31027 -24.15320 -23.76291 -22.48849 -19.62977 -17.54319 -16.58495 -15.38359 -14.84361 -14.31039 -13.52636 -13.44850 -12.95800 -12.31632 -12.02247 -11.59442 -11.57136 -11.24195 -10.94311 -10.82465 -10.69715 -10.37345 -10.23548 -10.05485 -9.61417 -9.51917 -9.10541 -9.06140 -8.82021 -8.35917 -8.26422 -5.90965 -3.95948 3.33892 3.38969 3.41641 4.47605 4.89853 5.36724 5.57931 5.61296 5.81334 6.18237 6.24747 6.36393 6.50335 6.56744 6.62631 6.68352 6.77924 6.85493 6.95195 7.02887 7.12410 7.22892 7.33586 7.39139 7.47996 7.65792 7.88245 8.00919 8.22119 8.26349 8.58066 9.03893 9.68379 11.13768 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046253 B = 0.013403 C = 0.012614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.221216 B = 2088.528815 C = 2219.307007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.050 4.050 3 C -0.118 4.118 4 C 0.105 3.895 5 H 0.051 0.949 6 O -0.567 6.567 7 C -0.163 4.163 8 C -0.085 4.085 9 C 0.079 3.921 10 C -0.128 4.128 11 C -0.513 4.513 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.884 3.116 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.279 1.279 19 H 0.023 0.977 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.362 0.638 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.011 0.989 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.274 1.915 6.798 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.175 4.175 4 C 0.046 3.954 5 H 0.069 0.931 6 O -0.371 6.371 7 C -0.201 4.201 8 C -0.123 4.123 9 C 0.079 3.921 10 C -0.185 4.185 11 C -0.551 4.551 12 H 0.088 0.912 13 C -0.137 4.137 14 N -0.526 5.526 15 Si 0.713 3.287 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.205 1.205 19 H 0.042 0.958 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.207 0.793 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.030 0.970 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.128 2.252 6.193 6.590 hybrid contribution -0.487 -0.934 -0.257 1.084 sum -0.358 1.317 5.936 6.091 Atomic orbital electron populations 1.21847 0.95446 1.01135 0.99150 1.21222 0.94942 0.95047 0.93821 1.21643 1.00345 0.96022 0.99463 1.22907 0.95024 0.89957 0.87471 0.93127 1.86548 1.83946 1.37485 1.29153 1.23290 0.97860 0.98786 1.00151 1.22227 0.99730 0.99342 0.91044 1.18646 0.93396 0.90528 0.89521 1.21922 0.97170 0.98423 1.01018 1.21565 0.93065 1.32775 1.07669 0.91160 1.24964 0.95155 0.96204 0.97397 1.69914 1.18269 1.39739 1.24684 0.86786 0.83041 0.78952 0.79925 1.20452 1.21538 1.20471 0.95763 0.92309 0.92391 0.93271 0.93450 0.94186 0.79343 0.92053 0.93559 0.92135 0.92941 0.90385 0.95436 0.96994 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 6.86 37.16 0.25 -2.17 16 2 C -0.05 -1.06 0.92 -153.39 -0.14 -1.20 16 3 C -0.12 -2.36 6.59 37.16 0.25 -2.11 16 4 C 0.10 1.99 3.61 -25.08 -0.09 1.90 16 5 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 6 O -0.57 -9.71 11.80 -35.23 -0.42 -10.13 16 7 C -0.16 -3.13 6.61 -24.74 -0.16 -3.29 16 8 C -0.09 -1.97 4.90 -25.07 -0.12 -2.09 16 9 C 0.08 1.89 0.62 -154.54 -0.10 1.79 16 10 C -0.13 -3.07 6.96 37.16 0.26 -2.81 16 11 C -0.51 -13.38 6.98 -34.44 -0.24 -13.62 16 12 H 0.07 1.80 4.67 -52.48 -0.25 1.56 16 13 C 0.06 1.71 5.17 -17.82 -0.09 1.61 16 14 N -0.89 -24.45 10.39 55.43 0.58 -23.87 16 15 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.06 1.23 7.18 -51.93 -0.37 0.86 16 21 H 0.06 1.21 7.03 -51.93 -0.37 0.84 16 22 H 0.05 0.98 6.62 -51.93 -0.34 0.64 16 23 H 0.05 0.94 6.86 -51.93 -0.36 0.59 16 24 H 0.04 0.76 7.54 -51.93 -0.39 0.37 16 25 H 0.36 4.49 9.11 45.56 0.42 4.90 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.49 7.62 -51.93 -0.40 1.09 16 29 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 30 H 0.08 2.06 6.11 -51.93 -0.32 1.74 16 31 H 0.03 0.64 6.86 -51.93 -0.36 0.28 16 32 H 0.01 0.25 6.62 -51.93 -0.34 -0.09 16 33 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 246.95 15.07 3.72 3.72 Total: -1.00 -27.68 246.95 -5.62 -33.30 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.29 Total: 3.02 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.19 Total: -21.99 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.58 Total: -23.87 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.42 Total: -10.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.68 -5.62 -33.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307251493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.871 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds