Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.05534 * 2 1 4 4 C 1.54260 * 110.03707 * 121.41788 * 2 1 3 5 5 H 1.09003 * 110.59946 * 24.15938 * 4 2 1 6 6 O 1.42903 * 110.48850 * 261.57822 * 4 2 1 7 7 C 1.54888 * 104.20079 * 142.89515 * 4 2 1 8 8 C 1.54888 * 102.74656 * 322.06182 * 7 4 2 9 9 C 1.53877 * 110.03405 * 238.58799 * 2 1 3 10 10 C 1.53003 * 110.03405 * 121.42719 * 9 2 1 11 11 C 1.50700 * 110.07176 * 0.02562 * 9 2 1 12 12 H 1.08007 * 120.00067 * 1.36091 * 11 9 2 13 13 C 1.37879 * 119.99957 * 181.35540 * 11 9 2 14 14 N 1.31512 * 119.99758 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99870 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47425 * 60.00493 * 15 13 11 17 17 H 1.48505 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47209 * 300.00458 * 15 13 11 19 19 H 1.09001 * 109.47116 * 300.03222 * 1 2 3 20 20 H 1.09000 * 109.47172 * 60.03471 * 1 2 3 21 21 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47641 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47218 * 299.96549 * 3 2 1 24 24 H 1.09001 * 109.47224 * 59.96374 * 3 2 1 25 25 H 0.96700 * 114.00311 * 183.76970 * 6 4 2 26 26 H 1.09004 * 110.75580 * 80.37395 * 7 4 2 27 27 H 1.08998 * 110.75523 * 203.74267 * 7 4 2 28 28 H 1.08997 * 110.48601 * 156.61937 * 8 7 4 29 29 H 1.09001 * 110.48032 * 279.26115 * 8 7 4 30 30 H 1.08998 * 109.46682 * 178.61955 * 10 9 2 31 31 H 1.08997 * 109.46982 * 298.62245 * 10 9 2 32 32 H 1.09000 * 109.46909 * 58.62427 * 10 9 2 33 33 H 0.97001 * 119.99825 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7554 1.2368 5 1 1.3153 -1.4659 1.5987 6 8 2.4141 0.1647 2.2707 7 6 3.3138 -1.5007 0.7190 8 6 2.8876 -1.9405 -0.7036 9 6 2.0571 -0.7535 -1.2338 10 6 2.9409 0.1705 -2.0742 11 6 0.9045 -1.2589 -2.0626 12 1 -0.1109 -1.0482 -1.7609 13 6 1.1462 -1.9902 -3.2062 14 7 2.3827 -2.2471 -3.5733 15 14 -0.2825 -2.6161 -4.2340 16 1 -1.0924 -1.4654 -4.7086 17 1 0.2405 -3.3692 -5.4022 18 1 -1.1316 -3.5118 -3.4080 19 1 -0.3633 0.5143 0.8897 20 1 -0.3633 0.5133 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 3.1446 1.4263 0.0005 23 1 1.6971 1.9546 -0.8903 24 1 1.6961 1.9550 0.8897 25 1 2.8064 -0.2519 3.0502 26 1 4.1711 -0.8290 0.6751 27 1 3.5326 -2.3678 1.3422 28 1 3.7638 -2.1035 -1.3310 29 1 2.2773 -2.8425 -0.6571 30 1 3.3288 -0.3791 -2.9318 31 1 2.3517 1.0189 -2.4224 32 1 3.7717 0.5298 -1.4669 33 1 2.5527 -2.7620 -4.3777 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307251493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = -77.567213 kcal Electronic energy + Delta-G solvation = -13969.062050 eV Core-core repulsion = 11800.630426 eV Total energy + Delta-G solvation = -2168.431625 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71195 -36.79042 -34.24144 -32.84081 -30.65407 -29.07336 -26.04296 -25.43758 -24.21630 -21.31934 -19.34794 -17.99976 -17.27017 -16.71874 -15.97620 -15.24407 -15.06907 -14.60213 -14.08130 -13.65934 -13.36048 -13.32195 -13.07229 -12.68564 -12.63915 -12.37880 -12.15514 -12.04374 -11.74415 -11.49267 -11.18075 -10.88452 -10.59718 -10.53543 -10.27638 -10.25397 -7.93971 -6.03436 1.44444 1.45841 1.51336 2.50503 3.30846 3.55959 3.98223 4.01840 4.27436 4.58365 4.65937 4.77137 4.89827 4.95040 4.97399 5.02661 5.08882 5.13668 5.19216 5.32281 5.37447 5.55394 5.57427 5.65170 5.71080 5.76013 5.89316 6.13480 6.31318 6.58902 7.02300 7.10318 7.62978 9.08782 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046253 B = 0.013403 C = 0.012614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.221216 B = 2088.528815 C = 2219.307007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.109 4.109 4 C 0.115 3.885 5 H 0.057 0.943 6 O -0.570 6.570 7 C -0.151 4.151 8 C -0.082 4.082 9 C 0.067 3.933 10 C -0.117 4.117 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.018 3.982 14 N -0.911 5.911 15 Si 0.937 3.063 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.274 1.274 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.386 0.614 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 2.276 8.361 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.166 4.166 4 C 0.057 3.943 5 H 0.075 0.925 6 O -0.378 6.378 7 C -0.189 4.189 8 C -0.120 4.120 9 C 0.067 3.933 10 C -0.175 4.175 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.180 4.180 14 N -0.550 5.550 15 Si 0.764 3.236 16 H -0.202 1.202 17 H -0.218 1.218 18 H -0.200 1.200 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.235 0.765 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.293 2.614 7.781 8.214 hybrid contribution -0.337 -1.023 -0.714 1.293 sum -0.630 1.590 7.067 7.271 Atomic orbital electron populations 1.21749 0.95035 1.00660 0.99560 1.21215 0.95388 0.95537 0.93705 1.21543 1.00042 0.95345 0.99685 1.22619 0.94711 0.89696 0.87308 0.92522 1.86485 1.84193 1.37318 1.29766 1.23191 0.98124 0.99840 0.97714 1.22033 0.98235 0.98306 0.93414 1.18738 0.92890 0.91052 0.90629 1.21781 0.97554 0.97899 1.00250 1.21955 0.93986 1.32150 1.07860 0.91023 1.25590 0.96948 0.96845 0.98638 1.70053 1.19641 1.40481 1.24873 0.85951 0.80705 0.78408 0.78528 1.20223 1.21827 1.19976 0.93636 0.93555 0.93290 0.93542 0.94156 0.92983 0.76545 0.91742 0.90975 0.94641 0.95076 0.93237 0.95857 0.95587 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 6.86 71.98 0.49 -3.91 16 2 C -0.06 -2.35 0.92 -51.46 -0.05 -2.40 16 3 C -0.11 -4.12 6.59 71.98 0.47 -3.65 16 4 C 0.12 4.04 3.61 31.67 0.11 4.15 16 5 H 0.06 1.94 7.86 -2.39 -0.02 1.92 16 6 O -0.57 -17.18 11.80 -148.98 -1.76 -18.94 16 7 C -0.15 -5.42 6.61 31.88 0.21 -5.21 16 8 C -0.08 -3.74 4.90 31.67 0.16 -3.59 16 9 C 0.07 3.17 0.62 -52.20 -0.03 3.14 16 10 C -0.12 -5.64 6.96 71.98 0.50 -5.14 16 11 C -0.52 -27.21 6.98 25.60 0.18 -27.03 16 12 H 0.07 3.65 4.67 -2.91 -0.01 3.63 16 13 C 0.02 0.97 5.17 84.66 0.44 1.41 16 14 N -0.91 -51.15 10.39 21.45 0.22 -50.93 16 15 Si 0.94 43.24 29.54 68.60 2.03 45.26 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.05 1.88 7.18 -2.39 -0.02 1.86 16 21 H 0.05 1.96 7.03 -2.39 -0.02 1.94 16 22 H 0.05 1.75 6.62 -2.39 -0.02 1.74 16 23 H 0.04 1.54 6.86 -2.39 -0.02 1.53 16 24 H 0.05 1.83 7.54 -2.39 -0.02 1.81 16 25 H 0.39 7.78 9.11 -74.06 -0.67 7.11 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.03 1.76 7.62 -2.39 -0.02 1.74 16 29 H 0.03 1.51 7.85 -2.39 -0.02 1.50 16 30 H 0.05 2.65 6.11 -2.39 -0.01 2.64 16 31 H 0.02 1.08 6.86 -2.39 -0.02 1.07 16 32 H 0.03 1.13 6.62 -2.39 -0.02 1.11 16 33 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -57.87 246.95 3.39 -54.47 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.42 Total: 12.36 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 2.49 Total: -42.22 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.22 Total: -50.93 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.76 Total: -18.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -57.87 3.39 -54.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307251493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.094 kcal (2) G-P(sol) polarization free energy of solvation -57.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds