Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 110.05183 * 2 1 4 4 C 1.54266 * 110.03211 * 121.41493 * 2 1 3 5 5 H 1.08998 * 110.48744 * 24.08241 * 4 2 1 6 6 O 1.42905 * 110.48508 * 261.57404 * 4 2 1 7 7 C 1.54883 * 104.31246 * 142.82901 * 4 2 1 8 8 C 1.54896 * 102.74929 * 322.12476 * 7 4 2 9 9 C 1.54081 * 110.15724 * 238.52986 * 2 1 3 10 10 C 1.52996 * 109.93091 * 0.12331 * 9 2 1 11 11 C 1.50703 * 110.15236 * 121.51626 * 9 2 1 12 12 H 1.08000 * 119.99954 * 358.71667 * 11 9 2 13 13 C 1.37883 * 119.99920 * 178.71904 * 11 9 2 14 14 N 1.31513 * 119.99879 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99686 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47361 * 90.00358 * 15 13 11 17 17 H 1.48506 * 109.46740 * 210.00049 * 15 13 11 18 18 H 1.48501 * 109.47406 * 329.99825 * 15 13 11 19 19 H 1.09004 * 109.46829 * 300.03562 * 1 2 3 20 20 H 1.09001 * 109.47203 * 60.03967 * 1 2 3 21 21 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46862 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46953 * 299.95778 * 3 2 1 24 24 H 1.08997 * 109.47472 * 59.96438 * 3 2 1 25 25 H 0.96697 * 113.99904 * 181.84427 * 6 4 2 26 26 H 1.09003 * 110.75713 * 80.43559 * 7 4 2 27 27 H 1.08998 * 110.76032 * 203.62615 * 7 4 2 28 28 H 1.08998 * 110.48349 * 156.62374 * 8 7 4 29 29 H 1.09002 * 110.48305 * 279.26505 * 8 7 4 30 30 H 1.09000 * 109.47050 * 301.40767 * 10 9 2 31 31 H 1.08994 * 109.47153 * 61.41390 * 10 9 2 32 32 H 1.09007 * 109.47227 * 181.41470 * 10 9 2 33 33 H 0.97000 * 119.99605 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7554 1.2369 5 1 1.3134 -1.4643 1.5981 6 8 2.4141 0.1648 2.2708 7 6 3.3131 -1.5033 0.7217 8 6 2.8884 -1.9433 -0.7014 9 6 2.0610 -0.7551 -1.2337 10 6 0.8905 -1.2668 -2.0756 11 6 2.9342 0.1522 -2.0617 12 1 3.0859 1.1781 -1.7603 13 6 3.5394 -0.3276 -3.2039 14 7 3.3542 -1.5768 -3.5711 15 14 4.6222 0.7969 -4.2298 16 1 6.0243 0.7081 -3.7486 17 1 4.5603 0.3796 -5.6537 18 1 4.1430 2.1967 -4.1029 19 1 -0.3633 0.5144 0.8897 20 1 -0.3633 0.5132 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 3.1446 1.4262 0.0005 23 1 1.6971 1.9545 -0.8904 24 1 1.6961 1.9550 0.8896 25 1 2.7791 -0.2544 3.0620 26 1 4.1718 -0.8331 0.6786 27 1 3.5314 -2.3685 1.3476 28 1 3.7654 -2.1084 -1.3273 29 1 2.2764 -2.8441 -0.6554 30 1 0.2659 -1.9225 -1.4690 31 1 0.2977 -0.4217 -2.4254 32 1 1.2741 -1.8210 -2.9324 33 1 3.7802 -1.9143 -4.3745 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307448659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -58.833574 kcal Electronic energy + Delta-G solvation = -13992.002688 eV Core-core repulsion = 11824.383415 eV Total energy + Delta-G solvation = -2167.619273 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01169 -35.27348 -32.37269 -31.08934 -28.89617 -27.32581 -24.15144 -23.75906 -22.37610 -19.72163 -17.48639 -16.63799 -15.24113 -14.81103 -14.34213 -13.54513 -13.46424 -12.79099 -12.54027 -12.04396 -11.75092 -11.42273 -11.15855 -10.91753 -10.81401 -10.59338 -10.27343 -10.23042 -10.02243 -9.60403 -9.54437 -9.22188 -9.02487 -8.78874 -8.36720 -8.21132 -5.89344 -3.94951 3.33804 3.41007 3.44517 4.48778 4.93869 5.36909 5.58695 5.64997 5.79014 6.11844 6.26730 6.36075 6.42402 6.60457 6.62996 6.75763 6.79117 6.79878 6.95842 7.03278 7.14793 7.26243 7.35526 7.44851 7.50999 7.61488 7.88888 8.05679 8.24452 8.27936 8.61419 9.05378 9.69347 11.14008 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.014037 C = 0.013642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.126155 B = 1994.204885 C = 2051.920732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.052 4.052 3 C -0.103 4.103 4 C 0.104 3.896 5 H 0.044 0.956 6 O -0.564 6.564 7 C -0.152 4.152 8 C -0.096 4.096 9 C 0.080 3.920 10 C -0.131 4.131 11 C -0.503 4.503 12 H 0.071 0.929 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.884 3.116 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.275 1.275 19 H 0.034 0.966 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.361 0.639 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 0.266 6.804 7.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.160 4.160 4 C 0.045 3.955 5 H 0.062 0.938 6 O -0.368 6.368 7 C -0.190 4.190 8 C -0.134 4.134 9 C 0.079 3.921 10 C -0.189 4.189 11 C -0.541 4.541 12 H 0.089 0.911 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.713 3.287 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.200 1.200 19 H 0.053 0.947 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.206 0.794 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.374 0.583 6.191 6.656 hybrid contribution 0.850 0.001 -0.229 0.880 sum -1.524 0.584 5.962 6.181 Atomic orbital electron populations 1.21965 0.96279 1.00589 1.00202 1.21280 0.93510 0.96511 0.93901 1.21516 1.01088 0.94955 0.98427 1.22900 0.95122 0.89888 0.87543 0.93758 1.86570 1.85311 1.37027 1.27911 1.23132 0.98214 0.98586 0.99048 1.22261 1.01417 0.97073 0.92624 1.18693 0.92224 0.91661 0.89477 1.21964 0.96854 0.98729 1.01313 1.21589 1.27565 0.97814 1.07180 0.91079 1.24963 0.96636 0.94900 0.97474 1.69916 1.44056 1.14091 1.24734 0.86720 0.81082 0.81313 0.79624 1.20946 1.21502 1.20027 0.94662 0.92489 0.93243 0.92449 0.93280 0.95249 0.79419 0.91280 0.93967 0.89995 0.95151 0.97100 0.95366 0.90244 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.20 37.16 0.27 -2.27 16 2 C -0.05 -1.10 0.93 -153.28 -0.14 -1.24 16 3 C -0.10 -2.20 6.25 37.16 0.23 -1.96 16 4 C 0.10 1.98 3.61 -25.08 -0.09 1.89 16 5 H 0.04 0.80 7.85 -51.93 -0.41 0.39 16 6 O -0.56 -9.92 11.80 -35.23 -0.42 -10.34 16 7 C -0.15 -3.03 6.62 -24.74 -0.16 -3.19 16 8 C -0.10 -2.22 5.44 -25.07 -0.14 -2.36 16 9 C 0.08 1.90 0.62 -154.44 -0.10 1.80 16 10 C -0.13 -3.11 6.97 37.16 0.26 -2.85 16 11 C -0.50 -13.25 7.13 -34.44 -0.25 -13.49 16 12 H 0.07 1.87 4.68 -52.49 -0.25 1.63 16 13 C 0.06 1.63 4.92 -17.82 -0.09 1.54 16 14 N -0.89 -24.47 9.92 55.43 0.55 -23.92 16 15 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 1.09 6.87 -51.93 -0.36 0.74 16 21 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 22 H 0.06 1.30 7.03 -51.93 -0.36 0.93 16 23 H 0.05 1.06 7.20 -51.93 -0.37 0.69 16 24 H 0.03 0.58 7.54 -51.93 -0.39 0.19 16 25 H 0.36 4.61 9.12 45.56 0.42 5.03 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 2.13 6.42 -51.93 -0.33 1.80 16 29 H 0.03 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.01 0.22 6.61 -51.93 -0.34 -0.12 16 31 H 0.03 0.65 6.87 -51.93 -0.36 0.29 16 32 H 0.08 2.08 6.11 -51.92 -0.32 1.76 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 245.77 15.07 3.70 3.70 Total: -1.00 -27.82 245.77 -5.62 -33.43 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.23 Total: 3.12 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -0.20 Total: -22.13 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.55 Total: -23.92 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.42 Total: -10.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.82 -5.62 -33.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307448659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.403 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds