Wall clock time and date at job start Mon Mar 30 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 110.05183 * 2 1 4 4 C 1.54266 * 110.03211 * 121.41493 * 2 1 3 5 5 H 1.08998 * 110.48744 * 24.08241 * 4 2 1 6 6 O 1.42905 * 110.48508 * 261.57404 * 4 2 1 7 7 C 1.54883 * 104.31246 * 142.82901 * 4 2 1 8 8 C 1.54896 * 102.74929 * 322.12476 * 7 4 2 9 9 C 1.54081 * 110.15724 * 238.52986 * 2 1 3 10 10 C 1.52996 * 109.93091 * 0.12331 * 9 2 1 11 11 C 1.50703 * 110.15236 * 121.51626 * 9 2 1 12 12 H 1.08000 * 119.99954 * 358.71667 * 11 9 2 13 13 C 1.37883 * 119.99920 * 178.71904 * 11 9 2 14 14 N 1.31513 * 119.99879 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99686 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47361 * 90.00358 * 15 13 11 17 17 H 1.48506 * 109.46740 * 210.00049 * 15 13 11 18 18 H 1.48501 * 109.47406 * 329.99825 * 15 13 11 19 19 H 1.09004 * 109.46829 * 300.03562 * 1 2 3 20 20 H 1.09001 * 109.47203 * 60.03967 * 1 2 3 21 21 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46862 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46953 * 299.95778 * 3 2 1 24 24 H 1.08997 * 109.47472 * 59.96438 * 3 2 1 25 25 H 0.96697 * 113.99904 * 181.84427 * 6 4 2 26 26 H 1.09003 * 110.75713 * 80.43559 * 7 4 2 27 27 H 1.08998 * 110.76032 * 203.62615 * 7 4 2 28 28 H 1.08998 * 110.48349 * 156.62374 * 8 7 4 29 29 H 1.09002 * 110.48305 * 279.26505 * 8 7 4 30 30 H 1.09000 * 109.47050 * 301.40767 * 10 9 2 31 31 H 1.08994 * 109.47153 * 61.41390 * 10 9 2 32 32 H 1.09007 * 109.47227 * 181.41470 * 10 9 2 33 33 H 0.97000 * 119.99605 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0585 -0.7554 1.2369 5 1 1.3134 -1.4643 1.5981 6 8 2.4141 0.1648 2.2708 7 6 3.3131 -1.5033 0.7217 8 6 2.8884 -1.9433 -0.7014 9 6 2.0610 -0.7551 -1.2337 10 6 0.8905 -1.2668 -2.0756 11 6 2.9342 0.1522 -2.0617 12 1 3.0859 1.1781 -1.7603 13 6 3.5394 -0.3276 -3.2039 14 7 3.3542 -1.5768 -3.5711 15 14 4.6222 0.7969 -4.2298 16 1 6.0243 0.7081 -3.7486 17 1 4.5603 0.3796 -5.6537 18 1 4.1430 2.1967 -4.1029 19 1 -0.3633 0.5144 0.8897 20 1 -0.3633 0.5132 -0.8903 21 1 -0.3633 -1.0277 0.0005 22 1 3.1446 1.4262 0.0005 23 1 1.6971 1.9545 -0.8904 24 1 1.6961 1.9550 0.8896 25 1 2.7791 -0.2544 3.0620 26 1 4.1718 -0.8331 0.6786 27 1 3.5314 -2.3685 1.3476 28 1 3.7654 -2.1084 -1.3273 29 1 2.2764 -2.8441 -0.6554 30 1 0.2659 -1.9225 -1.4690 31 1 0.2977 -0.4217 -2.4254 32 1 1.2741 -1.8210 -2.9324 33 1 3.7802 -1.9143 -4.3745 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307448659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:04 Heat of formation + Delta-G solvation = -76.459055 kcal Electronic energy + Delta-G solvation = -13992.766986 eV Core-core repulsion = 11824.383415 eV Total energy + Delta-G solvation = -2168.383571 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66855 -36.79149 -34.28136 -32.76306 -30.69192 -29.07742 -26.05585 -25.39961 -24.10711 -21.43587 -19.27361 -18.08779 -17.18187 -16.67694 -15.95468 -15.29967 -15.02475 -14.51155 -14.21389 -13.80557 -13.43779 -13.20853 -12.98079 -12.71553 -12.56094 -12.32835 -12.06735 -12.02973 -11.68247 -11.49544 -11.23843 -10.92593 -10.59117 -10.54500 -10.25646 -10.20286 -7.93533 -6.03269 1.41072 1.44335 1.51629 2.49831 3.31047 3.57488 4.00383 4.05609 4.26313 4.58552 4.67164 4.78606 4.80805 4.94941 4.99002 5.08345 5.11285 5.16179 5.19498 5.34088 5.43377 5.55912 5.59822 5.65932 5.71348 5.79551 5.88193 6.19212 6.32296 6.62450 7.03468 7.11341 7.62793 9.07753 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.014037 C = 0.013642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.126155 B = 1994.204885 C = 2051.920732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.093 4.093 4 C 0.115 3.885 5 H 0.066 0.934 6 O -0.572 6.572 7 C -0.144 4.144 8 C -0.095 4.095 9 C 0.068 3.932 10 C -0.122 4.122 11 C -0.512 4.512 12 H 0.066 0.934 13 C 0.017 3.983 14 N -0.909 5.909 15 Si 0.933 3.067 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.273 1.273 19 H 0.053 0.947 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.385 0.615 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 0.443 8.380 8.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C -0.150 4.150 4 C 0.056 3.944 5 H 0.084 0.916 6 O -0.379 6.379 7 C -0.182 4.182 8 C -0.133 4.133 9 C 0.067 3.933 10 C -0.180 4.180 11 C -0.551 4.551 12 H 0.084 0.916 13 C -0.181 4.181 14 N -0.549 5.549 15 Si 0.761 3.239 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.198 1.198 19 H 0.072 0.928 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.234 0.766 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.920 0.764 7.789 8.353 hybrid contribution 1.034 -0.046 -0.693 1.245 sum -1.886 0.718 7.096 7.377 Atomic orbital electron populations 1.21891 0.94540 1.01326 1.00745 1.21283 0.95016 0.95918 0.93823 1.21377 0.99678 0.95514 0.98414 1.22677 0.94713 0.89723 0.87261 0.91634 1.86507 1.85536 1.37203 1.28686 1.23054 0.98210 0.99489 0.97439 1.22120 0.99921 0.97087 0.94208 1.18780 0.92019 0.91893 0.90573 1.21840 0.97053 0.98525 1.00546 1.21911 1.27663 0.98014 1.07476 0.91637 1.25541 0.97928 0.95938 0.98644 1.70040 1.44825 1.15122 1.24887 0.85939 0.79694 0.79971 0.78286 1.20893 1.21561 1.19781 0.92796 0.93308 0.92383 0.94429 0.94566 0.93839 0.76645 0.92950 0.90995 0.93598 0.94835 0.94992 0.95705 0.93214 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.20 71.98 0.52 -3.99 16 2 C -0.06 -2.42 0.93 -51.38 -0.05 -2.47 16 3 C -0.09 -3.84 6.25 71.98 0.45 -3.39 16 4 C 0.11 4.00 3.61 31.67 0.11 4.12 16 5 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16 6 O -0.57 -17.99 11.80 -148.98 -1.76 -19.74 16 7 C -0.14 -5.43 6.62 31.89 0.21 -5.22 16 8 C -0.10 -4.36 5.44 31.67 0.17 -4.18 16 9 C 0.07 3.18 0.62 -52.13 -0.03 3.15 16 10 C -0.12 -5.73 6.97 71.98 0.50 -5.23 16 11 C -0.51 -27.13 7.13 25.60 0.18 -26.95 16 12 H 0.07 3.48 4.68 -2.91 -0.01 3.46 16 13 C 0.02 0.95 4.92 84.66 0.42 1.36 16 14 N -0.91 -50.97 9.92 21.45 0.21 -50.76 16 15 Si 0.93 43.88 29.54 68.60 2.03 45.91 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 20 H 0.05 1.77 6.87 -2.39 -0.02 1.76 16 21 H 0.06 1.92 6.62 -2.38 -0.02 1.91 16 22 H 0.04 1.66 7.03 -2.38 -0.02 1.65 16 23 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 24 H 0.04 1.64 7.54 -2.39 -0.02 1.62 16 25 H 0.39 8.19 9.12 -74.06 -0.68 7.51 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.41 6.42 -2.39 -0.02 2.40 16 29 H 0.03 1.47 7.85 -2.39 -0.02 1.45 16 30 H 0.03 1.31 6.61 -2.39 -0.02 1.30 16 31 H 0.02 1.12 6.87 -2.39 -0.02 1.11 16 32 H 0.05 2.62 6.11 -2.38 -0.01 2.61 16 33 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -58.59 245.77 3.39 -55.20 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.42 Total: 12.19 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 2.49 Total: -42.79 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.21 Total: -50.76 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.76 Total: -19.74 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.59 3.39 -55.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307448659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.261 kcal (2) G-P(sol) polarization free energy of solvation -58.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds