Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.05674 * 2 1 4 4 C 1.54267 * 110.03440 * 238.58548 * 2 1 3 5 5 H 1.09003 * 110.48441 * 335.91107 * 4 2 1 6 6 O 1.42894 * 110.48783 * 98.43081 * 4 2 1 7 7 C 1.54897 * 104.19575 * 217.10685 * 4 2 1 8 8 C 1.54966 * 102.77611 * 37.91138 * 7 4 2 9 9 C 1.53876 * 110.03162 * 121.41411 * 2 1 3 10 10 C 1.52998 * 110.03656 * 238.61842 * 9 2 1 11 11 C 1.50702 * 110.03084 * 0.02562 * 9 2 1 12 12 H 1.07996 * 119.99811 * 358.48277 * 11 9 2 13 13 C 1.37875 * 119.99632 * 178.48978 * 11 9 2 14 14 N 1.31519 * 120.00418 * 352.33500 * 13 11 9 15 15 Si 1.86806 * 119.99710 * 172.33833 * 13 11 9 16 16 H 1.48501 * 109.47039 * 89.99897 * 15 13 11 17 17 H 1.48497 * 109.47201 * 329.99776 * 15 13 11 18 18 H 1.48500 * 109.47015 * 209.99871 * 15 13 11 19 19 H 1.09003 * 109.47135 * 298.58557 * 1 2 3 20 20 H 1.09003 * 109.46599 * 58.58285 * 1 2 3 21 21 H 1.08997 * 109.47157 * 178.58063 * 1 2 3 22 22 H 1.09006 * 109.47023 * 181.41290 * 3 2 1 23 23 H 1.08993 * 109.47361 * 301.41765 * 3 2 1 24 24 H 1.09002 * 109.47127 * 61.41858 * 3 2 1 25 25 H 0.96705 * 113.99800 * 180.02562 * 6 4 2 26 26 H 1.08994 * 110.75575 * 156.25484 * 7 4 2 27 27 H 1.08993 * 110.75379 * 279.44137 * 7 4 2 28 28 H 1.08999 * 110.53349 * 203.43099 * 8 7 4 29 29 H 1.09008 * 110.47494 * 80.76805 * 8 7 4 30 30 H 1.08996 * 109.47500 * 179.33329 * 10 9 2 31 31 H 1.09000 * 109.47285 * 299.33543 * 10 9 2 32 32 H 1.08997 * 109.46813 * 59.32857 * 10 9 2 33 33 H 0.97000 * 119.99712 * 3.98444 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7554 -1.2369 5 1 1.3134 -1.4643 -1.5980 6 8 2.4142 0.1647 -2.2706 7 6 3.3137 -1.5008 -0.7191 8 6 2.8882 -1.9406 0.7046 9 6 2.0570 -0.7535 1.2338 10 6 2.9398 0.1707 2.0749 11 6 0.9037 -1.2596 2.0612 12 1 -0.1114 -1.0470 1.7598 13 6 1.1444 -1.9940 3.2030 14 7 2.3680 -2.3816 3.4899 15 14 -0.2675 -2.4384 4.3426 16 1 -0.8484 -3.7403 3.9266 17 1 -1.3117 -1.3850 4.2712 18 1 0.2352 -2.5433 5.7360 19 1 -0.3633 0.4917 0.9024 20 1 -0.3632 0.5357 -0.8771 21 1 -0.3633 -1.0273 -0.0255 22 1 3.1444 1.4262 -0.0253 23 1 1.6761 1.9623 -0.8769 24 1 1.7175 1.9472 0.9024 25 1 2.7526 -0.2564 -3.0727 26 1 3.5325 -2.3678 -1.3422 27 1 4.1717 -0.8299 -0.6782 28 1 3.7643 -2.1028 1.3325 29 1 2.2783 -2.8429 0.6586 30 1 3.2983 -0.3683 2.9518 31 1 3.7904 0.5019 1.4791 32 1 2.3596 1.0369 2.3928 33 1 3.1090 -2.1024 2.9297 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307448660.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -77.625744 kcal Electronic energy + Delta-G solvation = -14021.880764 eV Core-core repulsion = 11853.446601 eV Total energy + Delta-G solvation = -2168.434163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94770 -37.03272 -34.45040 -32.93277 -30.64207 -28.90120 -26.02179 -25.67759 -24.34809 -21.31661 -19.86144 -18.19016 -17.67217 -16.21509 -16.05191 -15.62792 -15.20244 -14.71377 -14.02439 -13.79937 -13.57838 -13.28796 -12.99826 -12.63700 -12.59816 -12.43766 -12.09165 -12.01968 -11.84675 -11.80146 -11.35304 -11.00185 -10.82660 -10.64482 -10.32331 -9.96718 -8.28930 -6.07433 1.56084 1.63607 1.79689 2.65375 3.33183 3.47991 3.82273 3.87813 4.16375 4.46774 4.51924 4.61295 4.71229 4.76315 4.78428 4.88940 4.91082 5.00984 5.06477 5.15060 5.20786 5.30790 5.35844 5.44169 5.54248 5.60861 5.79922 5.95278 6.37650 6.48394 6.92587 7.02005 7.70158 9.02375 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046561 B = 0.013513 C = 0.012617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.219632 B = 2071.616941 C = 2218.769176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.051 4.051 3 C -0.110 4.110 4 C 0.116 3.884 5 H 0.057 0.943 6 O -0.568 6.568 7 C -0.147 4.147 8 C -0.100 4.100 9 C 0.050 3.950 10 C -0.126 4.126 11 C -0.597 4.597 12 H 0.066 0.934 13 C -0.027 4.027 14 N -0.952 5.952 15 Si 1.101 2.899 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.292 1.292 19 H 0.045 0.955 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.387 0.613 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 3.302 -8.813 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.052 4.052 3 C -0.167 4.167 4 C 0.057 3.943 5 H 0.075 0.925 6 O -0.375 6.375 7 C -0.184 4.184 8 C -0.139 4.139 9 C 0.050 3.950 10 C -0.183 4.183 11 C -0.635 4.635 12 H 0.084 0.916 13 C -0.225 4.225 14 N -0.593 5.593 15 Si 0.926 3.074 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.219 1.219 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.236 0.764 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.192 2.914 -6.993 7.669 hybrid contribution 0.774 0.128 -1.335 1.548 sum -0.419 3.043 -8.328 8.876 Atomic orbital electron populations 1.21729 0.94903 1.00518 0.99623 1.21089 0.95468 0.95481 0.93113 1.21558 1.00088 0.95173 0.99917 1.22589 0.94545 0.89727 0.87441 0.92525 1.86488 1.86743 1.36695 1.27622 1.23147 0.98358 1.00026 0.96908 1.22377 0.97862 0.98865 0.94783 1.18933 0.93295 0.91055 0.91746 1.21927 0.98260 0.98803 0.99347 1.22745 0.94256 1.36408 1.10113 0.91616 1.26752 1.02431 0.94435 0.98930 1.70850 1.00739 1.43842 1.43824 0.83119 0.73036 0.76606 0.74596 1.20754 1.19963 1.21877 0.93548 0.93520 0.93552 0.93425 0.92748 0.94011 0.76400 0.90775 0.91349 0.94798 0.94762 0.95337 0.94340 0.94428 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 6.86 71.98 0.49 -3.85 16 2 C -0.05 -2.06 0.92 -51.46 -0.05 -2.11 16 3 C -0.11 -4.10 6.56 71.98 0.47 -3.63 16 4 C 0.12 4.02 3.62 31.67 0.11 4.13 16 5 H 0.06 1.94 7.83 -2.39 -0.02 1.92 16 6 O -0.57 -16.78 11.83 -148.98 -1.76 -18.55 16 7 C -0.15 -5.20 6.62 31.91 0.21 -4.98 16 8 C -0.10 -4.58 4.64 31.70 0.15 -4.43 16 9 C 0.05 2.36 0.61 -52.20 -0.03 2.32 16 10 C -0.13 -5.91 6.90 71.98 0.50 -5.41 16 11 C -0.60 -31.64 6.97 25.60 0.18 -31.46 16 12 H 0.07 3.42 4.67 -2.91 -0.01 3.41 16 13 C -0.03 -1.49 5.13 84.65 0.43 -1.05 16 14 N -0.95 -56.41 12.73 21.45 0.27 -56.14 16 15 Si 1.10 50.30 29.91 68.60 2.05 52.35 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H 0.05 1.91 7.08 -2.39 -0.02 1.90 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.05 1.89 7.11 -2.39 -0.02 1.87 16 22 H 0.05 1.75 6.76 -2.38 -0.02 1.73 16 23 H 0.05 1.88 7.60 -2.39 -0.02 1.86 16 24 H 0.04 1.57 6.72 -2.39 -0.02 1.56 16 25 H 0.39 7.55 9.12 -74.05 -0.68 6.87 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.03 1.63 6.37 -2.39 -0.02 1.62 16 29 H 0.03 1.69 7.85 -2.38 -0.02 1.67 16 30 H 0.03 1.47 5.74 -2.39 -0.01 1.46 16 31 H 0.04 1.62 6.78 -2.39 -0.02 1.60 16 32 H 0.04 1.72 6.70 -2.39 -0.02 1.71 16 33 H 0.27 15.91 3.58 -92.71 -0.33 15.58 16 Total: -1.00 -61.22 242.97 3.89 -57.33 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.86 Total: 15.46 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 2.47 Total: -50.47 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.27 Total: -56.14 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -1.76 Total: -18.55 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Total: -61.22 3.89 -57.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307448660.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.291 kcal (2) G-P(sol) polarization free energy of solvation -61.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds