Wall clock time and date at job start Mon Mar 30 2020 02:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.27574 * 307.09062 * 4 3 2 6 6 C 1.54948 * 110.31116 * 184.99837 * 4 3 2 7 7 C 1.55304 * 100.94261 * 204.63814 * 6 4 3 8 8 C 1.54381 * 102.25245 * 34.13548 * 7 6 4 9 9 C 1.53002 * 109.82904 * 219.13187 * 8 7 6 10 10 C 1.50691 * 109.83453 * 98.15533 * 8 7 6 11 11 H 1.07997 * 120.00210 * 0.02562 * 10 8 7 12 12 C 1.37880 * 120.00427 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99454 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 120.00484 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46846 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47188 * 119.99780 * 14 12 10 17 17 H 1.48498 * 109.47136 * 240.00267 * 14 12 10 18 18 O 1.43238 * 107.58695 * 338.63774 * 8 7 6 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.08999 * 111.12374 * 322.56223 * 6 4 3 27 27 H 1.09000 * 111.12226 * 86.71687 * 6 4 3 28 28 H 1.09006 * 110.84492 * 152.32145 * 7 6 4 29 29 H 1.08993 * 110.84703 * 275.74067 * 7 6 4 30 30 H 1.09002 * 109.47345 * 59.99161 * 9 8 7 31 31 H 1.08997 * 109.47407 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.46587 * 299.99573 * 9 8 7 33 33 H 0.97005 * 119.99560 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9474 0.8260 0.8165 6 6 4.1078 2.8902 0.1273 7 6 5.5102 2.7416 -0.5232 8 6 5.2519 1.6879 -1.6215 9 6 6.4398 0.7276 -1.7090 10 6 5.0468 2.3721 -2.9484 11 1 5.0940 3.4491 -3.0136 12 6 4.7997 1.6233 -4.0794 13 7 4.7437 0.3117 -4.0003 14 14 4.5447 2.4714 -5.7241 15 1 4.6570 3.9414 -5.5455 16 1 5.5785 2.0096 -6.6848 17 1 3.1964 2.1377 -6.2493 18 8 4.0692 0.9659 -1.2591 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.4872 3.5901 -0.4323 27 1 4.1891 3.1890 1.1723 28 1 5.8370 3.6853 -0.9601 29 1 6.2381 2.3795 0.2027 30 1 6.5717 0.2245 -0.7511 31 1 6.2513 -0.0138 -2.4855 32 1 7.3426 1.2878 -1.9525 33 1 4.5695 -0.2152 -4.7959 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307453751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:41 Heat of formation + Delta-G solvation = -69.264342 kcal Electronic energy + Delta-G solvation = -13442.127712 eV Core-core repulsion = 11274.056127 eV Total energy + Delta-G solvation = -2168.071585 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.40312 -34.52739 -32.57662 -30.84790 -29.96373 -26.97331 -25.14212 -23.15202 -20.73855 -20.18578 -19.11123 -16.76067 -15.37181 -14.60488 -14.11524 -13.96593 -13.37566 -12.79738 -12.51442 -12.17140 -11.95007 -11.64083 -11.27520 -11.19453 -10.84996 -10.71246 -10.56955 -10.40168 -10.27825 -10.05297 -9.94915 -9.61413 -9.34628 -9.01920 -8.42281 -7.73836 -5.88105 -4.03809 3.32326 3.40575 3.43813 4.47269 5.04125 5.32969 5.47265 5.55650 5.63520 5.71398 5.85505 6.01407 6.06449 6.22724 6.29886 6.32283 6.40900 6.50564 6.68761 6.74603 6.80984 6.85208 6.95163 6.99808 7.05962 7.21938 7.46403 7.84688 8.18032 8.46023 8.74225 9.15580 9.66878 11.13685 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.012982 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.429716 B = 2156.308780 C = 2587.859665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.075 3.925 5 H 0.042 0.958 6 C -0.146 4.146 7 C -0.143 4.143 8 C 0.227 3.773 9 C -0.141 4.141 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.080 3.920 13 N -0.861 5.861 14 Si 0.885 3.115 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 O -0.348 6.348 19 H 0.047 0.953 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.010 0.990 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 1.457 6.918 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.149 4.149 4 C 0.016 3.984 5 H 0.060 0.940 6 C -0.183 4.183 7 C -0.181 4.181 8 C 0.190 3.810 9 C -0.199 4.199 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.125 4.125 13 N -0.498 5.498 14 Si 0.713 3.287 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 O -0.268 6.268 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.529 1.126 6.684 7.642 hybrid contribution -0.059 0.637 -0.764 0.997 sum -3.588 1.763 5.920 7.143 Atomic orbital electron populations 1.21776 0.96896 1.00822 1.01145 1.21452 0.94534 0.97471 1.02360 1.21676 0.95280 0.96701 1.01215 1.22687 0.93141 0.92780 0.89754 0.94015 1.23162 0.97868 0.98129 0.99183 1.23197 0.95398 1.01181 0.98313 1.19628 0.82988 0.86921 0.91454 1.22011 0.97006 1.01089 0.99769 1.21269 1.50847 0.92670 0.91818 0.92487 1.24990 0.94086 0.94731 0.98643 1.69972 1.47086 1.04342 1.28376 0.86667 0.77779 0.79893 0.84353 1.19836 1.21041 1.20981 1.88743 1.44161 1.60705 1.33171 0.93376 0.92901 0.93519 0.93000 0.90706 0.91414 0.92684 0.91134 0.92610 0.91560 0.93257 0.97096 0.89139 0.94689 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.06 5.87 -26.73 -0.16 -2.21 16 3 C -0.11 -2.01 4.94 -26.73 -0.13 -2.14 16 4 C 0.08 1.56 3.40 -25.70 -0.09 1.47 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.15 -2.82 6.57 -24.48 -0.16 -2.98 16 7 C -0.14 -3.08 6.07 -24.79 -0.15 -3.23 16 8 C 0.23 5.83 0.82 -91.05 -0.07 5.76 16 9 C -0.14 -3.54 8.53 37.16 0.32 -3.23 16 10 C -0.53 -14.77 8.23 -34.44 -0.28 -15.05 16 11 H 0.06 1.58 7.48 -52.49 -0.39 1.18 16 12 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 13 N -0.86 -25.10 10.92 55.43 0.61 -24.49 16 14 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 O -0.35 -9.05 9.64 -35.23 -0.34 -9.39 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.49 7.99 -51.93 -0.42 1.08 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.40 7.61 -51.93 -0.39 1.00 16 29 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 2.51 6.01 -51.93 -0.31 2.20 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 265.75 15.07 4.00 4.00 Total: -1.00 -29.41 265.75 -6.91 -36.32 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.70 Total: -1.74 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -0.45 Total: -21.18 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.61 Total: -24.49 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.34 Total: -9.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.41 -6.91 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307453751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.943 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds